RNA id: TU852892



Basic Information


Item Value
RNA id TU852892
length 260
lncRNA type intronic
GC content 0.39
exon number 4
gene id G751202
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 79808455 ~ 79810491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGATTACTGCTACCATAATGTAGGTCGATATTACAGTTTCCACAATGTAGGGGAGATTACAGCTACCATAATGTAGGTGAGATTACAACTACCATAATGTAGGGGAGATTAGGGTCCATAATGTAGGAGAGATTACAGCTACCATAATGTAGGAGAGATTACTGCTACCATAATGTAGGTGAGATTACAGCTACCATAATGTAGGGGAGATTACACCTTCCATAATGTAGGAGAGATTACAGTTTCCATAATGTAGGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU852884 lncRNA upstream 7035 79797978 ~ 79801420 (+) True G751197
TU852834 lncRNA upstream 84810 79723139 ~ 79723645 (+) True G751165
TU852791 lncRNA upstream 91762 79714616 ~ 79716693 (+) True G751127
TU852824 lncRNA upstream 96267 79711565 ~ 79712188 (+) True G751159
TU852810 lncRNA upstream 141044 79666537 ~ 79667411 (+) True G751145
TU852937 lncRNA downstream 44250 79853848 ~ 79854862 (+) False G751228
TU852935 lncRNA downstream 44453 79854051 ~ 79854862 (+) True G751228
TU852956 lncRNA downstream 70343 79879941 ~ 79891534 (+) True G751247
TU852960 lncRNA downstream 87473 79897071 ~ 79898215 (+) False G751250
TU852961 lncRNA downstream 87473 79897071 ~ 79898215 (+) False G751250
XM_036986415.1 mRNA upstream 94906 79689267 ~ 79713549 (+) False LOC110530686
XM_036986418.1 mRNA upstream 94906 79689267 ~ 79713549 (+) False LOC110530686
XM_036986417.1 mRNA upstream 94906 79692643 ~ 79713549 (+) True LOC110530686
XM_036986411.1 mRNA upstream 212436 79590631 ~ 79596019 (+) False LOC110530727
XM_021613989.2 mRNA downstream 224026 80033624 ~ 80036953 (+) False LOC110530734
XM_021613987.2 mRNA downstream 224074 80033672 ~ 80036953 (+) False LOC110530734
XM_036986426.1 mRNA downstream 225107 80034705 ~ 80036953 (+) True LOC110530734
XM_021613991.2 mRNA downstream 261965 80071563 ~ 80074533 (+) False LOC110530735
XM_036986427.1 mRNA downstream 502927 80312525 ~ 80327493 (+) False acsm3
TU852726 other upstream 238578 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 461007 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 611077 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 828474 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 1010907 78797142 ~ 78797548 (+) True G750533
TU854284 other downstream 821712 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 932006 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 1677222 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 1973751 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 2112564 81922162 ~ 81926159 (+) False G753337

Expression Profile