RNA id: TU853741



Basic Information


Item Value
RNA id TU853741
length 211
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G751875
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 80029511 ~ 80029912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGTGAGCCAGCTTCTTGACTCCTCCGCTCCAGAGAAGGAAAGGTAGGGTGTGGAAGTACCAGACGTAGAACTGGTAGTGCAGCGAGCGGCTGAAGCACATGCCGATGAAGTTAGACGTGAAGAGGATCAGCACCATCTGATCTGAGGTGAGTTTCTGGGCAGGGATGACTCGCTTGGCTGGCTCCTTCAGCAgatccatgatgctctctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU853045 lncRNA upstream 14450 80014152 ~ 80015061 (+) True G751316
TU853009 lncRNA upstream 73294 79953398 ~ 79956217 (+) True G751291
TU852960 lncRNA upstream 131296 79897071 ~ 79898215 (+) False G751250
TU852961 lncRNA upstream 131296 79897071 ~ 79898215 (+) False G751250
TU852962 lncRNA upstream 131296 79897071 ~ 79898215 (+) True G751250
TU853743 lncRNA downstream 12571 80042483 ~ 80042752 (+) True G751877
TU853752 lncRNA downstream 22980 80052892 ~ 80053112 (+) True G751886
TU853763 lncRNA downstream 39000 80068912 ~ 80070354 (+) True G751896
TU853749 lncRNA downstream 41735 80071647 ~ 80074536 (+) True LOC110530735
TU853829 lncRNA downstream 149813 80179725 ~ 80180553 (+) True G751960
XM_036986415.1 mRNA upstream 315962 79689267 ~ 79713549 (+) False LOC110530686
XM_036986418.1 mRNA upstream 315962 79689267 ~ 79713549 (+) False LOC110530686
XM_036986417.1 mRNA upstream 315962 79692643 ~ 79713549 (+) True LOC110530686
XM_036986411.1 mRNA upstream 433492 79590631 ~ 79596019 (+) False LOC110530727
XM_021613989.2 mRNA downstream 3712 80033624 ~ 80036953 (+) False LOC110530734
XM_021613987.2 mRNA downstream 3760 80033672 ~ 80036953 (+) False LOC110530734
XM_036986426.1 mRNA downstream 4793 80034705 ~ 80036953 (+) True LOC110530734
XM_021613991.2 mRNA downstream 41651 80071563 ~ 80074533 (+) False LOC110530735
XM_036986427.1 mRNA downstream 282613 80312525 ~ 80327493 (+) False acsm3
TU852726 other upstream 459634 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 682063 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 832133 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 1049530 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 1231963 78797142 ~ 78797548 (+) True G750533
TU854284 other downstream 601398 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 711692 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 1456908 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 1753437 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 1892250 81922162 ~ 81926159 (+) False G753337

Expression Profile