RNA id: TU854124


Basic Information

Item Value
RNA id TU854124
length 307
lncRNA type intronic
GC content 0.38
exon number 1
gene id G752220
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 80362209 ~ 80362515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgtctcacctagatatCTGAAGAAATGCACTAACTGTACGTTTTCTCACCAAGTTGTGGGTAAAATAAATTGTGTTAGCCACTAATATTGatcgctagttagctggctaatgttagctagcatgtTTAATGTACTAAGAGCAAATGTAGCTAACTAATATAGCCTGGTACCAGTGCTGGTGTAGGCCGAGATAAGCCTGATGTTTGTGCAACGGTATCTTCTAAATCAGAAAGGAAAATGATGAATagattagctagctacatgaggTAAGAAAACATGTAATGTAACATCTCATTAGGGTCCtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU854122 lncRNA upstream 4501 80357506 ~ 80357708 (+) True G752218
TU854112 lncRNA upstream 20097 80341847 ~ 80342112 (+) True G752211
TU853898 lncRNA upstream 33375 80328628 ~ 80328834 (+) True map6d1
TU853829 lncRNA upstream 181656 80179725 ~ 80180553 (+) True G751960
TU853749 lncRNA upstream 287673 80071647 ~ 80074536 (+) True LOC110530735
TU854126 lncRNA downstream 3601 80366116 ~ 80366339 (+) True G752222
TU854127 lncRNA downstream 4148 80366663 ~ 80366944 (+) True G752223
TU854133 lncRNA downstream 11792 80374307 ~ 80374529 (+) True G752226
TU854147 lncRNA downstream 150750 80513265 ~ 80529443 (+) True G752239
TU854222 lncRNA downstream 158725 80521240 ~ 80521817 (+) True G752306
XM_021613994.2 mRNA upstream 22488 80328531 ~ 80339721 (+) False map6d1
XM_036986427.1 mRNA upstream 34716 80312525 ~ 80327493 (+) False acsm3
XM_036986428.1 mRNA upstream 34716 80312525 ~ 80327493 (+) True acsm3
XM_021613991.2 mRNA upstream 287676 80071563 ~ 80074533 (+) False LOC110530735
XM_036986426.1 mRNA upstream 325256 80034705 ~ 80036953 (+) True LOC110530734
XM_036986452.1 mRNA downstream 535720 80898235 ~ 80924566 (+) True LOC110530801
XM_036986454.1 mRNA downstream 575907 80938422 ~ 80965389 (+) False LOC110530803
XM_036986455.1 mRNA downstream 575963 80938478 ~ 80965389 (+) False LOC110530803
XM_021614073.2 mRNA downstream 576463 80938978 ~ 80965389 (+) False LOC110530803
XM_021614071.2 mRNA downstream 576661 80939176 ~ 80965389 (+) False LOC110530803
TU852726 other upstream 792332 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 1014761 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 1164831 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 1382228 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 1564661 78797142 ~ 78797548 (+) True G750533
TU854284 other downstream 268795 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 379089 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 1124305 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 1420834 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 1559647 81922162 ~ 81926159 (+) False G753337

Expression Profile