RNA id: TU855293



Basic Information


Item Value
RNA id TU855293
length 626
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G753205
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81486820 ~ 81487610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTTTCCTTGATGGACATCTGCTTGGCGGACATCTCTGAGAGCTCTGTCTTGGCGGGGGAGAGGAGGTCGGACACACTGTGTCCTGCGAAGACTTCACTGCTGTCCAGAGGCATGGACTTGGACTTGACCAGGGACTGGGGGAAGGACGTGGGCTCGGGTAGGGTCTGGGGAGTGGTCTGGGGAGGGGGCGGAGGAGGCTGGGGGAAGGACTGGGCTTTGGGTTGAGTATGAGGGGTTATCTGAGAGTAGGGCTTGGGTAATGGCTGGGTGAATCGTCTCTCCCTTTCCTGGGGCTTGGGCTGGGCTGAAAGTGCCTGGGTGAAGGGATGGGGTTGAGGTGGATGAGCGTAAggctggggatggggctgggGTGGATGAGCGTAAGgctggggatggggctggagtTGAGTTTGTGGGGGTTGTTGGGTGTAAGGTTTGGGCAGAGTCTGGGGAAGCTGGGTGAAAGACTGAACCTGCTGCTGCTGGACACTGGCGCTGTGAGAGACCCTCCTGGACGACACCACTGTTGTGGCAGTTCTCAATGACACACTGGTGTGATCCGCGTCTGTGTAGACATGAagaaagcaacacacacacaatgcattgTAATAAATCCATAGTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU855286 lncRNA upstream 11253 81475273 ~ 81475567 (+) True G753201
TU855278 lncRNA upstream 24011 81461782 ~ 81462809 (+) True G753193
TU855250 lncRNA upstream 25234 81448744 ~ 81461586 (+) True G753173
TU855248 lncRNA upstream 42739 81438231 ~ 81444081 (+) True LOC110530755
TU855305 lncRNA downstream 16502 81504112 ~ 81504476 (+) True G753216
TU855306 lncRNA downstream 17139 81504749 ~ 81505003 (+) True G753217
TU855308 lncRNA downstream 21681 81509291 ~ 81509533 (+) True G753219
TU855350 lncRNA downstream 77148 81564758 ~ 81565004 (+) True G753252
TU855354 lncRNA downstream 90621 81578231 ~ 81578436 (+) True G753256
XM_021614008.2 mRNA upstream 45092 81418372 ~ 81441728 (+) False LOC110530755
XM_021614009.2 mRNA upstream 45092 81418372 ~ 81441728 (+) False LOC110530755
XM_036986469.1 mRNA upstream 45092 81418388 ~ 81441728 (+) False LOC110530755
XM_036986470.1 mRNA upstream 45092 81418772 ~ 81441728 (+) False LOC110530755
XM_036986471.1 mRNA upstream 51136 81418372 ~ 81435684 (+) False LOC110530755
XM_036986479.1 mRNA downstream 133524 81621134 ~ 81632686 (+) False LOC110530757
XM_036986480.1 mRNA downstream 133528 81621138 ~ 81632686 (+) True LOC110530757
XM_021614031.2 mRNA downstream 145775 81633385 ~ 81636491 (+) False dnaaf6
XM_021614030.2 mRNA downstream 146212 81633822 ~ 81636491 (+) True dnaaf6
XM_036986483.1 mRNA downstream 149059 81636669 ~ 81645142 (+) False LOC110530761
TU854325 other upstream 744875 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 852768 80631310 ~ 80634052 (+) True G752357
TU852726 other upstream 1916943 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 2139372 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 2289442 79195270 ~ 79197378 (+) True G750935
TU855521 other downstream 295739 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 434552 81922162 ~ 81926159 (+) False G753337
TU857445 other downstream 1768129 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 2141762 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 2165435 83653045 ~ 83654438 (+) False G755277

Expression Profile