RNA id: TU855933


Basic Information

Item Value
RNA id TU855933
length 337
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G753684
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 82509266 ~ 82509602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtagagacaaacaatTATGCAAATTCATTTATAAAGTTAATTTACGCGGTTTAGCagctagctgactagctaacattaaccaGCTATCTGTATGTGAGAAGGAAATTGTaattctgtttgtttgtttttagggACTCTTGAaacaaccagcaaaccaggctgtcgtcttgtgaaacagtggacgtaaagaatctagctagctaaagtattTACTGCAAAATTGAATGTATAATTTGTGTGAGCTTGCCTTGCTGATATTTGCCATGCAATGCATctagatcaggggtgtcaaagtcaaatggacggagggccaaataaaaaaatcagctacaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU855922 lncRNA upstream 17997 82490956 ~ 82491269 (+) True G753673
TU855921 lncRNA upstream 20063 82488988 ~ 82489203 (+) True G753672
TU855917 lncRNA upstream 23372 82485695 ~ 82485894 (+) True G753668
TU855914 lncRNA upstream 29199 82479006 ~ 82480067 (+) True G753665
TU855913 lncRNA upstream 36125 82472771 ~ 82473141 (+) True G753664
TU855942 lncRNA downstream 32007 82541609 ~ 82542423 (+) True G753693
TU855967 lncRNA downstream 61638 82571240 ~ 82575943 (+) True G753714
TU855986 lncRNA downstream 92287 82601889 ~ 82605827 (+) True G753731
TU855999 lncRNA downstream 104761 82614363 ~ 82614581 (+) True G753739
TU855990 lncRNA downstream 144719 82654321 ~ 82678160 (+) True G753733
XM_036986511.1 mRNA upstream 124408 82362120 ~ 82384858 (+) False scp2a
XM_036986512.1 mRNA upstream 124408 82362682 ~ 82384858 (+) True scp2a
XM_036986513.1 mRNA upstream 124426 82362119 ~ 82384840 (+) False scp2a
XM_021614036.2 mRNA upstream 147365 82359203 ~ 82361901 (+) True czib
XM_036986514.1 mRNA upstream 150980 82341217 ~ 82358286 (+) True uck2b
XM_036986516.1 mRNA downstream 16348 82525950 ~ 82535140 (+) True LOC110530773
XM_021614040.2 mRNA downstream 154593 82664195 ~ 82665021 (+) True LOC110530778
XM_036986531.1 mRNA downstream 218880 82728482 ~ 82758005 (+) False LOC110530781
XR_005052974.1 mRNA downstream 218880 82728482 ~ 82758005 (+) True LOC110530781
trnaa-ugc-28 mRNA downstream 352509 82862111 ~ 82862184 (+) True trnaa-ugc-28
TU855496 other upstream 583107 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 706981 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 1021656 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 1767321 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 1875214 80631310 ~ 80634052 (+) True G752357
TU857445 other downstream 746137 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 1119770 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 1143443 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 1143443 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 1148495 83658097 ~ 83660046 (+) False G755298

Expression Profile