RNA id: TU855990


Basic Information

Item Value
RNA id TU855990
length 521
lncRNA type read_through
GC content 0.42
exon number 2
gene id G753733
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 82654321 ~ 82678160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaaaaaaaaaaaaaaaaaaaagacattCCTTTTCTATATAAAAATAGGCCAGTATTTACAGAATTTACAGTCATCCAGCCTTAAGGGGCAACCATGATGGATAAAATACTGTGGTAGTTGGTCTAGACCGCAGGGTAACTCCTCCCAGGAGTTTCACATTCACAGTCACACCACTGCTAGTATGAACTATGAACTACAGCAGTTGAATGTCCTCAGAGACCGTTCTAAATGGCTCTTTTTGTCCCAGGATGCTCAACAACTTTGTTGTGATTTGGAAACTTTGGGACTAAATGCAACGTTGCCGCATTTGTGGAGATCGCATTCACGGTAAAACGCTGCAGATGTCGTCTCAATCAGAAATTACATTTGAAGGTAAAGCACTACACAGCACGCCCTCGGATTTAATCTCGGCTGAAGTCTGAAGGCTGGAAGCCAAGTAGGCAATGTTGTTCAGTGCGCAGGACGCTGACCGATCGATGCTTTCATCTTCATCTGTTGCTCGATCATCCAATCAAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU855999 lncRNA upstream 39740 82614363 ~ 82614581 (+) True G753739
TU855986 lncRNA upstream 48494 82601889 ~ 82605827 (+) True G753731
TU855967 lncRNA upstream 78378 82571240 ~ 82575943 (+) True G753714
TU855942 lncRNA upstream 111898 82541609 ~ 82542423 (+) True G753693
TU855933 lncRNA upstream 144719 82509266 ~ 82509602 (+) True G753684
TU856047 lncRNA downstream 20696 82698856 ~ 82699122 (+) True G753778
TU856070 lncRNA downstream 46747 82724907 ~ 82725235 (+) True G753798
TU856071 lncRNA downstream 48965 82727125 ~ 82727929 (+) True G753799
TU856077 lncRNA downstream 62809 82740969 ~ 82741451 (+) True G753805
TU856097 lncRNA downstream 105271 82783431 ~ 82783725 (+) True G753823
XM_036986516.1 mRNA upstream 119181 82525950 ~ 82535140 (+) True LOC110530773
XM_036986511.1 mRNA upstream 269463 82362120 ~ 82384858 (+) False scp2a
XM_036986512.1 mRNA upstream 269463 82362682 ~ 82384858 (+) True scp2a
XM_036986513.1 mRNA upstream 269481 82362119 ~ 82384840 (+) False scp2a
XM_021614036.2 mRNA upstream 292420 82359203 ~ 82361901 (+) True czib
XM_036986531.1 mRNA downstream 50322 82728482 ~ 82758005 (+) False LOC110530781
XR_005052974.1 mRNA downstream 50322 82728482 ~ 82758005 (+) True LOC110530781
trnaa-ugc-28 mRNA downstream 183951 82862111 ~ 82862184 (+) True trnaa-ugc-28
XM_021614053.2 mRNA downstream 497574 83175734 ~ 83204194 (+) False LOC110530786
XM_036986538.1 mRNA downstream 497574 83175734 ~ 83204194 (+) False LOC110530786
TU855496 other upstream 728162 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 852036 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 1166711 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 1912376 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 2020269 80631310 ~ 80634052 (+) True G752357
TU857445 other downstream 577579 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 951212 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 974885 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 974885 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 979937 83658097 ~ 83660046 (+) False G755298

Expression Profile