RNA id: TU856047


Basic Information

Item Value
RNA id TU856047
length 267
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G753778
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 82698856 ~ 82699122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accactgtgactgacccaaacttaaggaaagctttgactatgtacagactcagcgagcatagccttgctattgagaaaggtcctcgtaggcagacctggctctcaagagaagccaggctatgtgcacactgcccacaaaatgaggtggaaactgagctgcatttcctaacctcctgccaaatgtatgaccatattagagacacatatttccctcagattacacaaactccaatatctactgggtgaaataccacagtgtgccataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU855990 lncRNA upstream 20696 82654321 ~ 82678160 (+) True G753733
TU855999 lncRNA upstream 84275 82614363 ~ 82614581 (+) True G753739
TU855986 lncRNA upstream 93029 82601889 ~ 82605827 (+) True G753731
TU855967 lncRNA upstream 122913 82571240 ~ 82575943 (+) True G753714
TU855942 lncRNA upstream 156433 82541609 ~ 82542423 (+) True G753693
TU856070 lncRNA downstream 25785 82724907 ~ 82725235 (+) True G753798
TU856071 lncRNA downstream 28003 82727125 ~ 82727929 (+) True G753799
TU856077 lncRNA downstream 41847 82740969 ~ 82741451 (+) True G753805
TU856097 lncRNA downstream 84309 82783431 ~ 82783725 (+) True G753823
TU856122 lncRNA downstream 127132 82826254 ~ 82829732 (+) False G753848
XM_021614040.2 mRNA upstream 33835 82664195 ~ 82665021 (+) True LOC110530778
XM_036986516.1 mRNA upstream 163716 82525950 ~ 82535140 (+) True LOC110530773
XM_036986511.1 mRNA upstream 313998 82362120 ~ 82384858 (+) False scp2a
XM_036986512.1 mRNA upstream 313998 82362682 ~ 82384858 (+) True scp2a
XM_036986513.1 mRNA upstream 314016 82362119 ~ 82384840 (+) False scp2a
XM_036986531.1 mRNA downstream 29360 82728482 ~ 82758005 (+) False LOC110530781
XR_005052974.1 mRNA downstream 29360 82728482 ~ 82758005 (+) True LOC110530781
trnaa-ugc-28 mRNA downstream 162989 82862111 ~ 82862184 (+) True trnaa-ugc-28
XM_021614053.2 mRNA downstream 476612 83175734 ~ 83204194 (+) False LOC110530786
XM_036986538.1 mRNA downstream 476612 83175734 ~ 83204194 (+) False LOC110530786
TU855496 other upstream 772697 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 896571 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 1211246 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 1956911 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 2064804 80631310 ~ 80634052 (+) True G752357
TU857445 other downstream 556617 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 930250 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 953923 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 953923 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 958975 83658097 ~ 83660046 (+) False G755298

Expression Profile