RNA id: TU856077



Basic Information


Item Value
RNA id TU856077
length 243
lncRNA type intronic
GC content 0.49
exon number 2
gene id G753805
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 82740969 ~ 82741451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaagatcatcaaggacatcaaccacccacgccactgcctgttcacaccgctacaatccagaaggtgaggtcagtacaggtgcatcaaagctgggaccgagagactgaaatcaCCTTCtattcaaggccatcagactgctaagcagcaatcactaactcagagaggctgctgcctacattgagacccaatcactaactcagagaggctgctgcctacatacagacccaatcactaactcagag

Function


GO: NA

KEGG:

id description

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU856071 lncRNA upstream 13040 82727125 ~ 82727929 (+) True G753799
TU856070 lncRNA upstream 15734 82724907 ~ 82725235 (+) True G753798
TU856047 lncRNA upstream 41847 82698856 ~ 82699122 (+) True G753778
TU855990 lncRNA upstream 62809 82654321 ~ 82678160 (+) True G753733
TU855999 lncRNA upstream 126388 82614363 ~ 82614581 (+) True G753739
TU856097 lncRNA downstream 41980 82783431 ~ 82783725 (+) True G753823
TU856122 lncRNA downstream 84803 82826254 ~ 82829732 (+) False G753848
TU856126 lncRNA downstream 84803 82826254 ~ 82829732 (+) False G753848
TU856132 lncRNA downstream 84803 82826254 ~ 82829732 (+) True G753848
TU856197 lncRNA downstream 136471 82877922 ~ 82878584 (+) True G753883
XM_021614040.2 mRNA upstream 75948 82664195 ~ 82665021 (+) True LOC110530778
XM_036986516.1 mRNA upstream 205829 82525950 ~ 82535140 (+) True LOC110530773
XM_036986511.1 mRNA upstream 356111 82362120 ~ 82384858 (+) False scp2a
XM_036986512.1 mRNA upstream 356111 82362682 ~ 82384858 (+) True scp2a
XM_036986513.1 mRNA upstream 356129 82362119 ~ 82384840 (+) False scp2a
trnaa-ugc-28 mRNA downstream 120660 82862111 ~ 82862184 (+) True trnaa-ugc-28
XM_021614053.2 mRNA downstream 434283 83175734 ~ 83204194 (+) False LOC110530786
XM_036986538.1 mRNA downstream 434283 83175734 ~ 83204194 (+) False LOC110530786
XM_036986539.1 mRNA downstream 434283 83175734 ~ 83204194 (+) False LOC110530786
XM_036986540.1 mRNA downstream 434283 83175734 ~ 83204194 (+) False LOC110530786
TU855496 other upstream 814810 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 938684 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 1253359 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 1999024 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 2106917 80631310 ~ 80634052 (+) True G752357
TU857445 other downstream 514288 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 887921 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 911594 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 911594 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 916646 83658097 ~ 83660046 (+) False G755298

Expression Profile


TU856077 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

TU856077 Expression in each Bioproject

Bar chart with 14 bars.
TU856077 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.