RNA id: TU856122


Basic Information

Item Value
RNA id TU856122
length 2974
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G753848
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 82826254 ~ 82829732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGCACCACACTGCTTTATTTATCTAGAGCAGACAGTTTGATATCAACGGGCcaagctcctcctcctcctcctcctcctcctcctcctcttactgTGCATCTGATACGGAGAGGAAAGACCAAGTGCTGCTGGTCGATCACAAGTCCAAATGATTATTAGTATGATTTCTGGATTAGAAACAATAAACATAAAAGACAAACATGTAAACAGACCGGAAATACCTCATGAAACACAATGTCAACAACTATGTAGAAAAAAACCAtcaataatatatttatatatatatatatatttatattttctatACCCACTAAAATATACCAAAAGAAGCATCTATTGGTCATCTGaggaactctttttttttttttttgtaaaaatgtctccCCCCCTCAGATTTTTAAATATCCTTCAGCTGTAAATGTGAAAACTCAAAATGAGAAAATGAaacctaaataaataaaaaaaatataaccaAAGAAATATGTTAATTCTTTATGTGATGTTTGTAATACTGCAGAGTGTGAGGAGAGATGACAACAAGCTTCTCCAGTGGATCGATAAAGTTTGTTCGAAGATTCGAAAATGGATTTGACACATTCATCAATCCAAAAGTTAGCTAGTTCTCAAGTCTCAGAAAGTCTGTCGTTCCTTGACAACTTGAGAGTACAAAGAGTCAGAGACACAGCTCCATGACATTCGATGCaggtcacagacagacacagctccATGACATTCGATGCaggtcacagacagacacacagctccaTGACATTAGATGCaggtcacagacagacacagctccATGACATTCGATGCaggtcacagacagacacacagctccaTGACATTAGATGCaggtcacagacagacacacagctccaTGACATTAGATGCaggtcacagacagacacacagctccaTGACATTCGATGCAGGTTACAGACAGAGATAAAAGGGCACTTTTACACTGAGCGACACCATGGGGGATCTCCATGGCCCAGGGAGACCTAGGGACCCAGCGAGGGCTGAGCTGCCCAGGGAGAGAGCCTCAGCTTGGGGAAGGGACAGTCTGGAAAGTCCTGGGGTTAGCAGCCTTCAGGTTGACCCAAAGTTTAATTATTTTCACAGTTGATTTCTACCTCCGCCACACATTCGTGGAAACTTGGCAATATAAAAAAAAGATTGAGGACAAGAGAGAAGCAGTAGAGAGGGAGGTTCGTCTTTCTTGAATACAAAAAGTGTACATGTGGTTGGTTGCATGTTCTCTCCTGGTTGACATTGGACAACATggctacatactgtagtgtaATGAGGGTGGCATCTTGACAACAGAGAGCAATAATGTCCTTGAGATGTGTACTTCCAGGAGGCCTCTGAACAAGTGAAAAAAGTAATCatctatacaaaacaacaaaactatATTCATATCAATTAATCTGTGTGAGAGAAAGACATGGGGATAATGTTCTGTTACGAGGGACTAGACCCTTACCCAATATAATGTTCTGTTAGGAGGGACTAGATCCGTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCGTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCTTACCCAATATAATGTTCTGTTAGGAGGGACTAGACCCTTACCCAATATAATGTTCTGTTAGGAGGGACTAGACCCTTACCCAATATAATGTTCTGTTAGGAGGGACTAGACCCTTACCCAATATAATGTTCTGTTAGGAGGGACTAGACCCTTACCCAATATAATGTTCTGTTAGGAGGGACCTAGACCCTTACCCCAATATAATGTTCTGTTAGGAGGGACTAGACCCTTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCTTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCTTACCCCATATAATGTTCTGTTAGGAGGGACTGGATAGACCCTTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCGTACCCCATATAATGTTCTGTTATGAGGGACTAGATAGACCCGTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCGTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCGTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCGTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCGTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCGTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCGTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCCCTACCCCATATAATGTTCTGTTAGGAGGGACTAGACCGAGGGTGGGCACTTCCAGTCCTCGTGGGCCTGATAGGTGTCAAagttttgccccagctaacacacctgactccaataatcaacgaatcatgatcttcagtttagaacgcaatttgattaatcagctgtgtttgatAGGATGGAGGTAAAAGAAAGACACCAATCAGAACCAATCAGAGGACTGGAGCTGCAAACCCCTGGACTAGACCCTTACCTCCATTTAATGTTCTGTTAGGAGGGACTAGACCGAGGGAGGGCTAGTGTCTGTTGTCCGTTAGTCTTTCCCCCGTTCATGTGTGTGTACGGGATGTGTTCCTCGTAGTTGTTTTGTCTCAACCCCAGTGACGAACCCGCCTCGTCCCGCTCAGAGCTGTGGTCCCTTCTCTGGGAGTAGGAGGAACTGTGGTCCCCTCTCTGGGAGTAAGATGAACTGTGGTCCCCTCTCTGGGAGTAAGAGGATGGGTCTAGGGGAATGCTCTCCATGTTGTCCATGTCCAGGTCAAAGTCCTCCTGCTCCGGAGGCTTGTTCTCCTGGCTATAGTAGAAGGAGACCTCCTGGAAGGACTGGTGAAGGTCCTTGTGGAGCATCTCAATGATCTCCTGGAAGCTGGGACGCAGCTTGGGGTTGTACTGCCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU856097 lncRNA upstream 42529 82783431 ~ 82783725 (+) True G753823
TU856077 lncRNA upstream 84803 82740969 ~ 82741451 (+) True G753805
TU856071 lncRNA upstream 98325 82727125 ~ 82727929 (+) True G753799
TU856070 lncRNA upstream 101019 82724907 ~ 82725235 (+) True G753798
TU856047 lncRNA upstream 127132 82698856 ~ 82699122 (+) True G753778
TU856197 lncRNA downstream 48190 82877922 ~ 82878584 (+) True G753883
TU856277 lncRNA downstream 191321 83021053 ~ 83023277 (+) True G753957
TU856301 lncRNA downstream 204511 83034243 ~ 83034574 (+) True G753981
TU856279 lncRNA downstream 233450 83063182 ~ 83064030 (+) True G753959
TU856278 lncRNA downstream 235054 83064786 ~ 83068093 (+) True G753958
XM_036986531.1 mRNA upstream 68249 82728482 ~ 82758005 (+) False LOC110530781
XR_005052974.1 mRNA upstream 68249 82728482 ~ 82758005 (+) True LOC110530781
XM_021614040.2 mRNA upstream 161233 82664195 ~ 82665021 (+) True LOC110530778
XM_036986516.1 mRNA upstream 291114 82525950 ~ 82535140 (+) True LOC110530773
XM_036986512.1 mRNA upstream 441396 82362682 ~ 82384858 (+) True scp2a
trnaa-ugc-28 mRNA downstream 32379 82862111 ~ 82862184 (+) True trnaa-ugc-28
XM_021614053.2 mRNA downstream 346002 83175734 ~ 83204194 (+) False LOC110530786
XM_036986538.1 mRNA downstream 346002 83175734 ~ 83204194 (+) False LOC110530786
XM_036986539.1 mRNA downstream 346002 83175734 ~ 83204194 (+) False LOC110530786
XM_036986540.1 mRNA downstream 346002 83175734 ~ 83204194 (+) False LOC110530786
TU855496 other upstream 900095 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 1023969 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 1338644 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 2084309 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 2192202 80631310 ~ 80634052 (+) True G752357
TU857445 other downstream 426007 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 799640 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 823313 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 823313 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 828365 83658097 ~ 83660046 (+) False G755298

Expression Profile