RNA id: TU856197



Basic Information


Item Value
RNA id TU856197
length 267
lncRNA type intronic
GC content 0.58
exon number 2
gene id G753883
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 82877922 ~ 82878584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagaagaggaggtggcggaggaagaagaagagaagGAGGTGgcggaggaggaggcggaggaagaagaagaggaggcggaggaagaagaagaggaggaggcggaggaggaagaagaggaggcggaggaagaagaagaggaggaggcggaggaggaagaagaggaggcggcggaggaagaagaagaggaggtggagaaagaagaggaggtggagaaagaagaggagaagaagaggagaaggaagaggggcCGGCGGGGTAAGAAGAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU856122 lncRNA upstream 48190 82826254 ~ 82829732 (+) False G753848
TU856126 lncRNA upstream 48190 82826254 ~ 82829732 (+) False G753848
TU856132 lncRNA upstream 48190 82826254 ~ 82829732 (+) True G753848
TU856097 lncRNA upstream 94197 82783431 ~ 82783725 (+) True G753823
TU856077 lncRNA upstream 136471 82740969 ~ 82741451 (+) True G753805
TU856277 lncRNA downstream 142469 83021053 ~ 83023277 (+) True G753957
TU856301 lncRNA downstream 155659 83034243 ~ 83034574 (+) True G753981
TU856279 lncRNA downstream 184598 83063182 ~ 83064030 (+) True G753959
TU856278 lncRNA downstream 186202 83064786 ~ 83068093 (+) True G753958
TU857361 lncRNA downstream 327160 83205744 ~ 83208931 (+) True G754864
trnaa-ugc-28 mRNA upstream 15738 82862111 ~ 82862184 (+) True trnaa-ugc-28
XM_036986531.1 mRNA upstream 119917 82728482 ~ 82758005 (+) False LOC110530781
XR_005052974.1 mRNA upstream 119917 82728482 ~ 82758005 (+) True LOC110530781
XM_021614040.2 mRNA upstream 212901 82664195 ~ 82665021 (+) True LOC110530778
XM_036986516.1 mRNA upstream 342782 82525950 ~ 82535140 (+) True LOC110530773
XM_021614053.2 mRNA downstream 297150 83175734 ~ 83204194 (+) False LOC110530786
XM_036986538.1 mRNA downstream 297150 83175734 ~ 83204194 (+) False LOC110530786
XM_036986539.1 mRNA downstream 297150 83175734 ~ 83204194 (+) False LOC110530786
XM_036986540.1 mRNA downstream 297150 83175734 ~ 83204194 (+) False LOC110530786
XM_036986541.1 mRNA downstream 297150 83175734 ~ 83204194 (+) True LOC110530786
TU855496 other upstream 951763 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 1075637 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 1390312 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 2135977 80741604 ~ 80741945 (+) True G752398
TU854284 other upstream 2243870 80631310 ~ 80634052 (+) True G752357
TU857445 other downstream 377155 83255739 ~ 83257866 (+) True G754927
TU857895 other downstream 750788 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 774461 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 774461 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 779513 83658097 ~ 83660046 (+) False G755298

Expression Profile