RNA id: TU857538


Basic Information

Item Value
RNA id TU857538
length 238
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G755002
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83330023 ~ 83330260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAAACCAAATCTAATTTTAAGATTGAGTTGGTGATTTTTATAGTAGGCTGAGCACACTGAGCAGCTCATCGGAGTAGGAAGCAGGTTTTTCCATCACCTGCTAGCAGTTTTTCCATCACCTGCTGTGAAAGAGTAGCCTAGATTCCTATTTGAGATCACAGAGCCAATTATAGCCAcatttgttcaaatcaaatcaaatcgtatttgtcacatgcgcctgatacaacaggtgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU857532 lncRNA upstream 10847 83311759 ~ 83319176 (+) True G754996
TU857517 lncRNA upstream 29045 83300758 ~ 83300978 (+) True G754989
TU857441 lncRNA upstream 49780 83231472 ~ 83280243 (+) True LOC110530792
TU857464 lncRNA upstream 63717 83259999 ~ 83266306 (+) True G754946
TU857453 lncRNA upstream 85248 83242328 ~ 83244775 (+) True G754935
TU857552 lncRNA downstream 22950 83353210 ~ 83353486 (+) True G755014
TU857557 lncRNA downstream 48412 83378672 ~ 83380929 (+) True LOC110530794
TU857566 lncRNA downstream 51056 83381316 ~ 83382316 (+) False G755027
TU857567 lncRNA downstream 51056 83381316 ~ 83382316 (+) True G755027
TU857568 lncRNA downstream 52557 83382817 ~ 83383032 (+) True G755028
XM_036986862.1 mRNA upstream 1973 83316744 ~ 83328050 (+) True cplx4c
XR_002474602.2 mRNA upstream 48498 83231275 ~ 83281525 (+) False LOC110530792
XR_005052976.1 mRNA upstream 48498 83231275 ~ 83281525 (+) False LOC110530792
XM_036986540.1 mRNA upstream 125829 83175734 ~ 83204194 (+) False LOC110530786
XM_021614061.2 mRNA downstream 31128 83361388 ~ 83378832 (+) False LOC110530794
XM_021614062.2 mRNA downstream 60434 83390694 ~ 83399592 (+) True calr3b
XM_036986549.1 mRNA downstream 75099 83405359 ~ 83471799 (+) False LOC110530798
XM_036986548.1 mRNA downstream 75101 83405361 ~ 83472252 (+) False LOC110530798
XM_021614078.2 mRNA downstream 382054 83712314 ~ 83726845 (+) False LOC110530806
TU857445 other upstream 72157 83255739 ~ 83257866 (+) True G754927
TU855496 other upstream 1403864 81922162 ~ 81926159 (+) False G753337
TU855521 other upstream 1527738 81783349 ~ 81802285 (+) True sdhc
TU855294 other upstream 1842413 81486820 ~ 81487610 (+) True G753205
TU854325 other upstream 2588078 80741604 ~ 80741945 (+) True G752398
TU857895 other downstream 299112 83629372 ~ 83629738 (+) True G755286
TU857884 other downstream 322785 83653045 ~ 83654438 (+) False G755277
TU857885 other downstream 322785 83653045 ~ 83654438 (+) True G755277
TU857907 other downstream 327837 83658097 ~ 83660046 (+) False G755298
TU857995 other downstream 455700 83785960 ~ 83786941 (+) True LOC110529145

Expression Profile