RNA id: TU857976


Basic Information

Item Value
RNA id TU857976
length 2478
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G755357
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83906225 ~ 83908702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggatgtgatgcagcctggattcgaaccagggactgtagtgacgcctcttgcactgagatgcagggccttagaccgctgcaccactcgggagcccaaaggATGTTAAAGATATTCAAATGCTGGGGCTATGGAAAAACGAACATTTTTAGTAGTTCTTAGTTTATAAAGTTGTCATCAGGTATCTCTCCAATAATGTATATAGAagggagggggaaaaaaaggtgTTTTTAAGGAAAAACAATTCAACGACTTTCTTTTCTTCCTGCATCAAACGTATGGATCAATGATCCAATTTAACATGTAGGCTACATATCTTATTTGTTTTGTATGAAGACGTTGATGGTTGGGTTGTTTATTACTCAATGggtatgtttacatgcacagtAATAATTCAATATTAAACTGATTGTGTCAGTAAGCATATTATGCAATAGTCATGTAAGCAGAGTAAGGCGTTTATCTTAATCGGCGTAAGGTCAAAATCGAAGGCATACGCCGATTAAAACACATGGTTTTCTGAGTAATCGTTCTAATTATTAGAATGCCTTaaaaggatcggacccttttattttcaatttttttgcctaaaatgacacctAAATCTAACTCCCTTTATTTAGCTCagtacctgaagcaaggatatgcaaatTCCTAATAccaagtttgtggaaatgtgaaattattgaaggagaatataacacattagatctggtaaaagataatacaaagaaaaaaaacttttctatttttattttttgttccatctttgaaatgcaagaaagAGGCCATTATATCACTTAGCAGTGTAGGagaaatttagattttggccactagatgggagcagtgtatgtgcaaagttttatactgatccaatgaaccattgcattactgttcacaatgttgtatcaagtctgcccaactGTGccaaattggtcaattgatacattttcaagtacataactatagacaaaatacaaaaatgatatggtaatacgaaatttaagtttacacactcccaggaatgtcataaatGATGGataattagcttccctacagaaacactaaccttcacacatctagatggtgggaaacccagttcctacattttaatataaaaattgattttatcaaacagaACTATACTACATTTAATCTCTGGGGCTCTCAGGGTGACATATCAGAGCAAGATTacagaatgtaagtacattatttaccttcagaggtgaatgtatcaaaccagttgccgtgattaatagttttgttgttgtgcactctcctcaaacaatagcattatgtttttcactgtaatagctactgtcaattggacagtgcagttagattaacaagaatttaagctttctgaccatataagacatgtctatgtcctgggaaattttcttgttacttatgTCATGCTAATCatattagcgcacgttagctcaaccggaCATGCGTCAGTCATTTCAAAGCTCACCACATTGAATTACACAATTTCCAAGCCCATTTCATAGAGAATGTTACAAAACTGTACTTCATTTAGTAACTTACTTTGAAGAGATGAGGATTGGGTCTAAATAGGGTTTTGGTGTTTGGTACTCTTAATTCATTGTACTCGTCTTTAACTGCCATTTCCTGAAAGTCAGACTCTTACCACATGCCAACTCCTTTTCAGCAGCATCAGCATTCACCACTTTGTTTGGTTATCCTTAGATATATATTATCCAGACTTGCCCAGAGGGAATTGTTGATATGCTGTACATTTTTTATTCTaagtaacattttatttgtaaaaatgtaaatgtctttattttactgatagaaagataaaaaaaaaaatatttatccaCAATCTGCTCTGGACAAGTCTGGTGCTGGACTGTCTTAAAATTAAATGAAATTATTAAGGCTGACTTCATTCAGTGTCCAGAAAAATTAATTGATGTTGTATGCGCATATTTAATTATGTATTGCCTCATTTGCATATTAGTAAAACAAATAATTTGGGGCTACATTCAACTAGTTAAAGTTGTTTtaagtgtaaaaaataaatatctgTTAGGGTGTGGTTCCTGGACTTAATCAGCATTCTACctgtgtatttgatctgcacaTGAGCTTGCGCCAGCCGAGCGAGCCTCACTCTTTAGTACGAGTGAAGTGAGTTCGGAACAACGGGTCTTAGAAGTAGTTTTCACAAACTTTTATATGTCCGAACTCGAATCAAATATGCCtcacaaaaataacatggtcactgtggtagaaTGTTTGtcaattttctgcatttatcagtgccatcaggtagcctgattttaaacatgtccatgtaaacaggattattagggaaatggctcttcttgcaaagcatgtaaacgttttaaTCAAATTATTATATTAATCAGACGATCAACAATcgcattattgtgtgcatgtaaccgtacTCGTTGAGTAGTTcaaatgatagatttttttttgACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU857977 lncRNA upstream 1831 83901980 ~ 83904394 (+) False LOC110530814
TU857991 lncRNA upstream 14537 83891044 ~ 83891688 (+) True G755370
TU857987 lncRNA upstream 19560 83886039 ~ 83886665 (+) True G755366
TU858027 lncRNA upstream 48645 83857008 ~ 83857580 (+) True G755399
TU858026 lncRNA upstream 49581 83856296 ~ 83856644 (+) True G755398
TU858033 lncRNA downstream 2746 83911448 ~ 83911724 (+) True G755405
TU858037 lncRNA downstream 14646 83923348 ~ 83923964 (+) True G755409
TU857969 lncRNA downstream 25879 83934581 ~ 83950747 (+) True G755353
TU858052 lncRNA downstream 54604 83963306 ~ 83963521 (+) True G755424
TU858055 lncRNA downstream 57358 83966060 ~ 83966344 (+) True G755427
XM_021614093.2 mRNA upstream 2944 83895686 ~ 83903281 (+) False LOC110530814
XM_021614094.2 mRNA upstream 2944 83895686 ~ 83903281 (+) False LOC110530814
XM_021614088.2 mRNA upstream 23502 83875531 ~ 83882723 (+) False LOC110530812
XM_036986569.1 mRNA upstream 23502 83875598 ~ 83882723 (+) False LOC110530812
XM_036986567.1 mRNA upstream 23502 83876416 ~ 83882723 (+) True LOC110530812
XM_021614096.2 mRNA downstream 5281 83913983 ~ 83918907 (+) False lrrc42
XM_021614095.2 mRNA downstream 5294 83913996 ~ 83918907 (+) True lrrc42
XM_021614101.2 mRNA downstream 42168 83950870 ~ 83952733 (+) True tceanc2
XM_036986572.1 mRNA downstream 527786 84436488 ~ 84931644 (+) False LOC110492646
XM_036986574.1 mRNA downstream 527786 84436488 ~ 84931644 (+) False LOC110492646
TU857978 other upstream 613 83903635 ~ 83905612 (+) True LOC110530814
TU857984 other upstream 16588 83886814 ~ 83889637 (+) True G755363
TU857995 other upstream 119284 83785960 ~ 83786941 (+) True LOC110529145
TU857907 other upstream 246179 83658097 ~ 83660046 (+) False G755298
TU857884 other upstream 251787 83653045 ~ 83654438 (+) False G755277
TU858056 other downstream 60676 83969378 ~ 83970697 (+) True G755428
TU858237 other downstream 353285 84261987 ~ 84262966 (+) True G755585
TU858258 other downstream 394768 84303470 ~ 84308274 (+) True G755602
TU858875 other downstream 650084 84558786 ~ 84561891 (+) True G756134
TU859041 other downstream 968292 84876994 ~ 84878079 (+) True G756271

Expression Profile