RNA id: TU858033



Basic Information


Item Value
RNA id TU858033
length 277
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G755405
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83911448 ~ 83911724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AtacaaaatgtatttccattgttagagcggtcactcgAATATCTTGTCAATAAAATAGATAATCTTTGGACCGCTACTGATTGAAAATTCCATCTCAACATTAGGATGTTTAAGAGTCTTCTTGGCGATAATATCCACTTCCTCATTCCCCTCTACTTCCACATGAGTTGGTACCCAGAGAAACATCACAAATTCCCCCATCTGTTTCACCCTATACAAGCACTGAAAAACCTCATACAATAGATCCTGTCTGCCCTGGGACACACATGACTTTAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU857976 lncRNA upstream 2746 83906225 ~ 83908702 (+) True G755357
TU857977 lncRNA upstream 7054 83901980 ~ 83904394 (+) False LOC110530814
TU857991 lncRNA upstream 19760 83891044 ~ 83891688 (+) True G755370
TU857987 lncRNA upstream 24783 83886039 ~ 83886665 (+) True G755366
TU858027 lncRNA upstream 53868 83857008 ~ 83857580 (+) True G755399
TU858037 lncRNA downstream 11624 83923348 ~ 83923964 (+) True G755409
TU857969 lncRNA downstream 22857 83934581 ~ 83950747 (+) True G755353
TU858052 lncRNA downstream 51582 83963306 ~ 83963521 (+) True G755424
TU858055 lncRNA downstream 54336 83966060 ~ 83966344 (+) True G755427
TU858062 lncRNA downstream 63061 83974785 ~ 83975013 (+) True G755431
XM_021614093.2 mRNA upstream 8167 83895686 ~ 83903281 (+) False LOC110530814
XM_021614094.2 mRNA upstream 8167 83895686 ~ 83903281 (+) False LOC110530814
XM_021614088.2 mRNA upstream 28725 83875531 ~ 83882723 (+) False LOC110530812
XM_021614096.2 mRNA downstream 2259 83913983 ~ 83918907 (+) False lrrc42
XM_021614095.2 mRNA downstream 2272 83913996 ~ 83918907 (+) True lrrc42
XM_021614101.2 mRNA downstream 39146 83950870 ~ 83952733 (+) True tceanc2
XM_036986572.1 mRNA downstream 524764 84436488 ~ 84931644 (+) False LOC110492646
XM_036986574.1 mRNA downstream 524764 84436488 ~ 84931644 (+) False LOC110492646
TU857978 other upstream 5836 83903635 ~ 83905612 (+) True LOC110530814
TU857984 other upstream 21811 83886814 ~ 83889637 (+) True G755363
TU857995 other upstream 124507 83785960 ~ 83786941 (+) True LOC110529145
TU857907 other upstream 251402 83658097 ~ 83660046 (+) False G755298
TU857885 other upstream 257010 83653045 ~ 83654438 (+) True G755277
TU858056 other downstream 57654 83969378 ~ 83970697 (+) True G755428
TU858237 other downstream 350263 84261987 ~ 84262966 (+) True G755585
TU858258 other downstream 391746 84303470 ~ 84308274 (+) True G755602
TU858875 other downstream 647062 84558786 ~ 84561891 (+) True G756134
TU859041 other downstream 965270 84876994 ~ 84878079 (+) True G756271

Expression Profile