RNA id: TU857969


Basic Information

Item Value
RNA id TU857969
length 2100
lncRNA type antisense_over
GC content 0.47
exon number 8
gene id G755353
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83934581 ~ 83950747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCGCTTCAATCTTGTTTATTTCAAAACCATTCCTCATCAGGAGAAAAGTAAAGTTACAACTACCCACAGCGCTGTCATGTCTAAAGCAAATCTGAAGTCACGTTTATCAGCGTTAAATTGTATcatatttgaaaacaaaatctcTGTTGTGACAAAGAGCTGCTTATAAAACAGAAAACCTCCACCCAACCACTACAGATTAAACACAACCACAACAAGAGAAAGGGATAGATACAGCGGTAGTGGTAGATGCACATAGCCCGTTACTGACCCGTGTCATTTCACCAAAATGTATTTAGGGTTTCTACATTCCAAATGAAAATCGGCACATAAAACTTGTGCTACATCCCCCAATGGCTCCccatttcctttatagtgcagtATTCTTTGACaacactatctagggaatagggggccattggGGACTCATGAAGAGAATTCAAACACAATAATTATTATTCAATAACACATCAAATGAGGGTCTGGAATACACACACCAACAAAGAAAGTCTTAAAAAGAAGCTGATGTAACTGCGCTGCCATCGTCGTGATAGTGCATCACTCTATGCCAATTCacagaacaacaacaaacacccccCAATTCTTATGCCAATCTCTAGAGTTTGAGAGAGGGACAAGACAACAGCCAATACAAAAACTAATGTGCTGGAAGCAGTTTTAGACTAAAACGGGTTCTAAACAGGGTGAAAAAGTAAGACTGACTTGGGCTTtctgaacaaaaaaaaaacaagggcCAGCTTCAGTTTGCAGACCCAGATTAAACCTAGTCCTGGACTGAAAAACACCTAATTTAGCATGCTTTTTCATAAATCTTCTTAGATTTCCTTCCTCAACCTGCACAATCATGTTTCAATTCACTAGTCCGGACCCAGATTAATCGAGGTCTTGAAAATCTCCATAAAAAGGCCTTTTACTCTTAATCATCATCTCCCCCCTGTTGGTTTGTAGCCTGGGTAAAGGTCGGGTTGTGTCCTTGCCAGTGGCAAGAAGCGGAAAGATAGCACAAACCGACTGGTGCCCAGGCTAGCTGGTTTGATGTTTAGATGTTGGACTGGTCCAGGTTAACTTTGGAAGGGAGGGGtccagcctcctcctcctgcccaGAGGTGGTGATGATGACCAGAGAGGATGCTGGGTAAGGGGTCAGCAGTTTCTGGTCCTTGGCGTACTCCATGTCTCCATAGATACTCAGTTTCTCAGCTGGGACATATTGGTCAACAGCGGTCGCCACAGTAGCACAGCAGATCCAGATGAGAACCAGAATAGACAGGATCAGAGTGGTGGTCAGGATCCAGCCTGGGAGCCAGGGGttcCTGGAGAGACAGCTGAAGAGGTTGTAGTTGTCCTCGTTGATGCTGCGGTCCACATAcatgtccctgtccctctcctggaCGAAACTACGCTGGTAGTCCTTGTACACCGGGCTACCAAGGCCAGGATATCTCTTCTGTGGTTCTCCCCTGACATCGTCTTTCTGGAGCTCAAACGCAGGAATAAACTGGATCTGTGGTTCAGTctGGAAGATGACCAGCTTCCCGTCGTCAGCCTGGAGGTAGAAGGTCCAAGAGGAGGAGATTAAGCTGTGGGCCTGACTCATGACATCATCCCAGAACCCTCTCACCAGAGTCAAAGGGTACAGCAGGTGGATACGGGGCATCATGGCCAGCAACTGCTCTTGTCTTTGTTCAGCAAACGGTAGCTGACTCTGGCAGCCCAGGTTACAGGCATACTGCTCCTCTGACTGGCTGTACGCTTCATGACAAGTGGAGTCACACTCGACTTTAGTTTGGTTCAGATCCTCGCTGTCGCCCACGAACTGGCAAATGGAGAACAGGCGACAACCTCTCTGGCAGGCGTACAGTTCCTCCTCCCGAGGATATGTGTGCAAACTGTAAGTCATTTGACATGTCTTATGGCAAGACGCAGTATTTCCCAAAACTCCATCAAAAACATCAGCAGTTGCCGAGGTGTATGCGAGCACGAAGCACAGACTCACGAACACACGAAAGGACTTCAATGCCCTCATTTTAGCCTGCTGCGAAAAATCCCAACAAACAACAAGCGAGTGCTCCTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU858037 lncRNA upstream 10617 83923348 ~ 83923964 (+) True G755409
TU858033 lncRNA upstream 22857 83911448 ~ 83911724 (+) True G755405
TU857976 lncRNA upstream 25879 83906225 ~ 83908702 (+) True G755357
TU857977 lncRNA upstream 30187 83901980 ~ 83904394 (+) False LOC110530814
TU857991 lncRNA upstream 42893 83891044 ~ 83891688 (+) True G755370
TU858052 lncRNA downstream 12559 83963306 ~ 83963521 (+) True G755424
TU858055 lncRNA downstream 15313 83966060 ~ 83966344 (+) True G755427
TU858062 lncRNA downstream 24038 83974785 ~ 83975013 (+) True G755431
TU858071 lncRNA downstream 37892 83988639 ~ 83988898 (+) True G755440
TU858074 lncRNA downstream 47527 83998274 ~ 83998501 (+) True G755443
XM_021614096.2 mRNA upstream 15674 83913983 ~ 83918907 (+) False lrrc42
XM_021614095.2 mRNA upstream 15674 83913996 ~ 83918907 (+) True lrrc42
XM_021614093.2 mRNA upstream 31300 83895686 ~ 83903281 (+) False LOC110530814
XM_021614094.2 mRNA upstream 31300 83895686 ~ 83903281 (+) False LOC110530814
XM_036986567.1 mRNA upstream 51858 83876416 ~ 83882723 (+) True LOC110530812
XM_021614101.2 mRNA downstream 123 83950870 ~ 83952733 (+) True tceanc2
XM_036986572.1 mRNA downstream 485741 84436488 ~ 84931644 (+) False LOC110492646
XM_036986574.1 mRNA downstream 485741 84436488 ~ 84931644 (+) False LOC110492646
XM_036986575.1 mRNA downstream 485741 84436488 ~ 84931644 (+) False LOC110492646
XM_036986576.1 mRNA downstream 485741 84436488 ~ 84931644 (+) False LOC110492646
TU857978 other upstream 28969 83903635 ~ 83905612 (+) True LOC110530814
TU857984 other upstream 44944 83886814 ~ 83889637 (+) True G755363
TU857995 other upstream 147640 83785960 ~ 83786941 (+) True LOC110529145
TU857907 other upstream 274535 83658097 ~ 83660046 (+) False G755298
TU857885 other upstream 280143 83653045 ~ 83654438 (+) True G755277
TU858056 other downstream 18631 83969378 ~ 83970697 (+) True G755428
TU858237 other downstream 311240 84261987 ~ 84262966 (+) True G755585
TU858258 other downstream 352723 84303470 ~ 84308274 (+) True G755602
TU858875 other downstream 608039 84558786 ~ 84561891 (+) True G756134
TU859041 other downstream 926247 84876994 ~ 84878079 (+) True G756271

Expression Profile