RNA id: TU858071



Basic Information


Item Value
RNA id TU858071
length 260
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G755440
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83988639 ~ 83988898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gCTGGATGCTgtagaaaacaggtacaaaacgatctataaccacagtaaaacgagtcctatatcgacataacccgaaaggccactcagtaaggaagaagccactgctccaaaactgccttaaaaaagccagactacggtttgcaactgcactttttggagaaatgtcctctggtctgatgaaacaaaaatagaaccgtttggccataatgaccatcgttatgtttggaggaaaaaggggaggcttgcaagctgaagaacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU858062 lncRNA upstream 13626 83974785 ~ 83975013 (+) True G755431
TU858055 lncRNA upstream 22295 83966060 ~ 83966344 (+) True G755427
TU858052 lncRNA upstream 25118 83963306 ~ 83963521 (+) True G755424
TU857969 lncRNA upstream 37892 83934581 ~ 83950747 (+) True G755353
TU858037 lncRNA upstream 64675 83923348 ~ 83923964 (+) True G755409
TU858074 lncRNA downstream 9376 83998274 ~ 83998501 (+) True G755443
TU858088 lncRNA downstream 34212 84023110 ~ 84023806 (+) True G755455
TU858099 lncRNA downstream 47452 84036350 ~ 84038320 (+) True G755464
TU858114 lncRNA downstream 69890 84058788 ~ 84059081 (+) True G755473
TU858118 lncRNA downstream 77686 84066584 ~ 84067069 (+) True G755477
XM_021614101.2 mRNA upstream 35906 83950870 ~ 83952733 (+) True tceanc2
XM_021614096.2 mRNA upstream 69732 83913983 ~ 83918907 (+) False lrrc42
XM_021614095.2 mRNA upstream 69732 83913996 ~ 83918907 (+) True lrrc42
XM_021614093.2 mRNA upstream 85358 83895686 ~ 83903281 (+) False LOC110530814
XM_036986572.1 mRNA downstream 447590 84436488 ~ 84931644 (+) False LOC110492646
XM_036986574.1 mRNA downstream 447590 84436488 ~ 84931644 (+) False LOC110492646
XM_036986575.1 mRNA downstream 447590 84436488 ~ 84931644 (+) False LOC110492646
XM_036986576.1 mRNA downstream 447590 84436488 ~ 84931644 (+) False LOC110492646
XM_036986577.1 mRNA downstream 447590 84436488 ~ 84931644 (+) False LOC110492646
TU858056 other upstream 17942 83969378 ~ 83970697 (+) True G755428
TU857978 other upstream 83027 83903635 ~ 83905612 (+) True LOC110530814
TU857984 other upstream 99002 83886814 ~ 83889637 (+) True G755363
TU857995 other upstream 201698 83785960 ~ 83786941 (+) True LOC110529145
TU857907 other upstream 328593 83658097 ~ 83660046 (+) False G755298
TU858237 other downstream 273089 84261987 ~ 84262966 (+) True G755585
TU858258 other downstream 314572 84303470 ~ 84308274 (+) True G755602
TU858875 other downstream 569888 84558786 ~ 84561891 (+) True G756134
TU859041 other downstream 888096 84876994 ~ 84878079 (+) True G756271
TU859074 other downstream 947168 84936066 ~ 84937744 (+) False G756298

Expression Profile