RNA id: TU858909



Basic Information


Item Value
RNA id TU858909
length 378
lncRNA type intronic
GC content 0.42
exon number 2
gene id G756160
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 84622926 ~ 84623443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTATATGCATGGCTAATAGGCGTGTAATTGCCTCTTAATGGCGCAGCCCACACGCAGTTCTACACACTAAACACCTCAGAAAGAGAACGTTGATATTTTCTCTGTTATAAAGGGGTTTTCTAGAAGGTTCAGTAGTAGTGCTCTGTAAACTGATGTGTTAAAGGGGTTTTCTAGAAGGTTCAGTAGTAGTGGTCTGTAAACTGATGTGTTAAAGGGGATTTCTAGAAGGTTCAGTAGTAGTGCTCTGTAAACTGATGTGTTAAAGGGGTTTTCTAGAAGGTTCAGTAGTAGTGCTCTGTAAACTGATGTGTCGTTAAGAGCTGAGGTAGAAATCTGTAAACCGGTTAGCCATTGTTTGTCCAGACATGAGTGCAGGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU858866 lncRNA upstream 22672 84550494 ~ 84600254 (+) False G756129
TU858867 lncRNA upstream 22672 84550757 ~ 84600254 (+) False G756129
TU858895 lncRNA upstream 26672 84595729 ~ 84596254 (+) True G756153
TU858893 lncRNA upstream 29886 84592194 ~ 84593040 (+) True G756151
TU858885 lncRNA upstream 42702 84579611 ~ 84580224 (+) True G756144
TU858921 lncRNA downstream 23522 84646965 ~ 84647661 (+) True G756171
TU858923 lncRNA downstream 30108 84653551 ~ 84654229 (+) True G756173
TU858931 lncRNA downstream 47474 84670917 ~ 84671381 (+) True G756181
TU858932 lncRNA downstream 48986 84672429 ~ 84673292 (+) True G756182
TU858950 lncRNA downstream 62398 84685841 ~ 84688490 (+) True G756198
XM_021614101.2 mRNA upstream 670193 83950870 ~ 83952733 (+) True tceanc2
XM_021614096.2 mRNA upstream 704019 83913983 ~ 83918907 (+) False lrrc42
XM_021614095.2 mRNA upstream 704019 83913996 ~ 83918907 (+) True lrrc42
XM_021614093.2 mRNA upstream 719645 83895686 ~ 83903281 (+) False LOC110530814
XR_005052977.1 mRNA downstream 177830 84801273 ~ 84804572 (+) True LOC118965568
XR_005052978.1 mRNA downstream 319531 84942974 ~ 84964998 (+) True LOC118965569
XM_036986892.1 mRNA downstream 342783 84966226 ~ 84970196 (+) True LOC110531029
XM_021614102.2 mRNA downstream 350154 84973597 ~ 84978102 (+) False capsla
XM_036986588.1 mRNA downstream 350264 84973707 ~ 84978102 (+) False capsla
TU858875 other upstream 61035 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 314652 84303470 ~ 84308274 (+) True G755602
TU858237 other upstream 359960 84261987 ~ 84262966 (+) True G755585
TU858056 other upstream 652229 83969378 ~ 83970697 (+) True G755428
TU857978 other upstream 717314 83903635 ~ 83905612 (+) True LOC110530814
TU859041 other downstream 253551 84876994 ~ 84878079 (+) True G756271
TU859074 other downstream 312623 84936066 ~ 84937744 (+) False G756298
TU859075 other downstream 312623 84936066 ~ 84937147 (+) False G756298
TU859221 other downstream 633339 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 1328525 85951968 ~ 86028274 (+) True G757472

Expression Profile