RNA id: TU859037



Basic Information


Item Value
RNA id TU859037
length 348
lncRNA type intronic
GC content 0.39
exon number 2
gene id G756269
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 84875181 ~ 84875979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGAGTATTTCAGTATACACATTagaatgggaggagacagagtATTTCAGTATACACATTAGAATGGGAGGAGACAGAGTATTACAGTATACGCATTagaatgggaggagacagagtATTACAGTATACACATTAGACTGGGAGGAGACAGAGTATTTCAGTATACGCATTagaatgggaggagacagagtATTTCAGTATACACATTagaatgggaggagacagagtATTTCAGTATACACATTagaatgggaggagacagagtATTTCAGTATACACATTAGAAATGGGAGGAGACAGAGTATTACAGTATACACATTagaatgggaggagacagagtATTACAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU859031 lncRNA upstream 20118 84851444 ~ 84855063 (+) True G756264
TU859030 lncRNA upstream 23366 84851444 ~ 84851815 (+) False G756264
TU858763 lncRNA upstream 58804 84807861 ~ 84816377 (+) True LOC110492646
TU858761 lncRNA upstream 74395 84797483 ~ 84800786 (+) True G756044
TU859010 lncRNA upstream 82280 84792583 ~ 84792901 (+) True G756246
TU859040 lncRNA downstream 1015 84876994 ~ 84878079 (+) False G756271
TU859045 lncRNA downstream 8600 84884579 ~ 84884966 (+) True G756273
TU859059 lncRNA downstream 33613 84909592 ~ 84909907 (+) True G756286
TU859062 lncRNA downstream 35678 84911657 ~ 84913157 (+) True G756287
TU859071 lncRNA downstream 49651 84925630 ~ 84925983 (+) True G756295
XR_005052977.1 mRNA upstream 70609 84801273 ~ 84804572 (+) True LOC118965568
XM_021614101.2 mRNA upstream 922448 83950870 ~ 83952733 (+) True tceanc2
XM_021614096.2 mRNA upstream 956274 83913983 ~ 83918907 (+) False lrrc42
XM_021614095.2 mRNA upstream 956274 83913996 ~ 83918907 (+) True lrrc42
XM_021614094.2 mRNA upstream 971900 83895686 ~ 83903281 (+) False LOC110530814
XR_005052978.1 mRNA downstream 66995 84942974 ~ 84964998 (+) True LOC118965569
XM_036986892.1 mRNA downstream 90247 84966226 ~ 84970196 (+) True LOC110531029
XM_021614102.2 mRNA downstream 97618 84973597 ~ 84978102 (+) False capsla
XM_036986588.1 mRNA downstream 97728 84973707 ~ 84978102 (+) False capsla
XM_036986587.1 mRNA downstream 98175 84974154 ~ 84978102 (+) True capsla
TU858875 other upstream 313290 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 566907 84303470 ~ 84308274 (+) True G755602
TU858237 other upstream 612215 84261987 ~ 84262966 (+) True G755585
TU858056 other upstream 904484 83969378 ~ 83970697 (+) True G755428
TU857978 other upstream 969569 83903635 ~ 83905612 (+) True LOC110530814
TU859041 other downstream 1015 84876994 ~ 84878079 (+) True G756271
TU859074 other downstream 60087 84936066 ~ 84937744 (+) False G756298
TU859075 other downstream 60087 84936066 ~ 84937147 (+) False G756298
TU859221 other downstream 380803 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 1075989 85951968 ~ 86028274 (+) True G757472

Expression Profile