RNA id: TU859059



Basic Information


Item Value
RNA id TU859059
length 231
lncRNA type intronic
GC content 0.41
exon number 2
gene id G756286
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 84909592 ~ 84909907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagtggctccggggggaaatttgctgcaattctacacattttgccatgtggtgGAGAGAAGTAATGACCGTTtttaacctgtagtgacaccccatcctgtgaacgggaccgttatcatcatcggacactaattagcataacgcaacggacataaatcttcatagaaaatattcctattcatgaaaatcacaagtgaaatatattggaacacagcttagccttttgttaatc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU859045 lncRNA upstream 24626 84884579 ~ 84884966 (+) True G756273
TU859040 lncRNA upstream 31513 84876994 ~ 84878079 (+) False G756271
TU859037 lncRNA upstream 33613 84875181 ~ 84875979 (+) True G756269
TU859031 lncRNA upstream 54529 84851444 ~ 84855063 (+) True G756264
TU859030 lncRNA upstream 57777 84851444 ~ 84851815 (+) False G756264
TU859062 lncRNA downstream 1750 84911657 ~ 84913157 (+) True G756287
TU859071 lncRNA downstream 15723 84925630 ~ 84925983 (+) True G756295
TU859072 lncRNA downstream 24371 84934278 ~ 84934616 (+) True G756296
TU859073 lncRNA downstream 25271 84935178 ~ 84935486 (+) True G756297
TU859076 lncRNA downstream 26886 84936793 ~ 84937744 (+) True G756298
XR_005052977.1 mRNA upstream 105020 84801273 ~ 84804572 (+) True LOC118965568
XM_021614101.2 mRNA upstream 956859 83950870 ~ 83952733 (+) True tceanc2
XM_021614096.2 mRNA upstream 990685 83913983 ~ 83918907 (+) False lrrc42
XM_021614095.2 mRNA upstream 990685 83913996 ~ 83918907 (+) True lrrc42
XM_021614094.2 mRNA upstream 1006311 83895686 ~ 83903281 (+) False LOC110530814
XR_005052978.1 mRNA downstream 33067 84942974 ~ 84964998 (+) True LOC118965569
XM_036986892.1 mRNA downstream 56319 84966226 ~ 84970196 (+) True LOC110531029
XM_021614102.2 mRNA downstream 63690 84973597 ~ 84978102 (+) False capsla
XM_036986588.1 mRNA downstream 63800 84973707 ~ 84978102 (+) False capsla
XM_036986587.1 mRNA downstream 64247 84974154 ~ 84978102 (+) True capsla
TU859041 other upstream 31513 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 347701 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 601318 84303470 ~ 84308274 (+) True G755602
TU858237 other upstream 646626 84261987 ~ 84262966 (+) True G755585
TU858056 other upstream 938895 83969378 ~ 83970697 (+) True G755428
TU859074 other downstream 26159 84936066 ~ 84937744 (+) False G756298
TU859075 other downstream 26159 84936066 ~ 84937147 (+) False G756298
TU859221 other downstream 346875 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 1042061 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 1207756 86117663 ~ 86117948 (+) True G757663

Expression Profile