RNA id: TU859110


Basic Information

Item Value
RNA id TU859110
length 201
lncRNA type intronic
GC content 0.35
exon number 1
gene id G756329
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85004716 ~ 85004916 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTAATTGTTAGGGAACTACCACCACATATTAAATTAGTACAAGGACTCTCACTAAAGGatgcaacaaatatagcctcttcCAAGACATGCCTCAAAATATATTAAAACACGAGAAACAACAAGACCATGCACCCACTAGTGGTCAAAATATCTTTGGAAtgtggtatggtactgtattctgaattacagtaaattactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859093 lncRNA upstream 41249 84961547 ~ 84963467 (+) False G756314
TU859094 lncRNA upstream 41249 84961547 ~ 84963467 (+) False G756314
TU859095 lncRNA upstream 41249 84961937 ~ 84963467 (+) True G756314
TU859083 lncRNA upstream 55176 84949319 ~ 84949540 (+) True G756305
TU859079 lncRNA upstream 65921 84938501 ~ 84938795 (+) True G756301
TU859129 lncRNA downstream 40463 85045379 ~ 85045702 (+) True G756348
TU859133 lncRNA downstream 48875 85053791 ~ 85054430 (+) True G756352
TU859154 lncRNA downstream 110619 85115535 ~ 85131519 (+) True G756372
TU859174 lncRNA downstream 158697 85163613 ~ 85165864 (+) False G756388
TU859173 lncRNA downstream 158895 85163811 ~ 85165864 (+) True G756388
XM_021614102.2 mRNA upstream 26614 84973597 ~ 84978102 (+) False capsla
XM_036986588.1 mRNA upstream 26614 84973707 ~ 84978102 (+) False capsla
XM_036986587.1 mRNA upstream 26614 84974154 ~ 84978102 (+) True capsla
XM_036986892.1 mRNA upstream 34520 84966226 ~ 84970196 (+) True LOC110531029
XR_005052978.1 mRNA upstream 39718 84942974 ~ 84964998 (+) True LOC118965569
XM_036986590.1 mRNA downstream 119642 85124558 ~ 85144377 (+) False LOC110530843
XM_036986591.1 mRNA downstream 119642 85124558 ~ 85144377 (+) False LOC110530843
XM_036986592.1 mRNA downstream 119642 85124558 ~ 85144377 (+) False LOC110530843
XR_005052979.1 mRNA downstream 119642 85124558 ~ 85144377 (+) True LOC110530843
XM_036986598.1 mRNA downstream 203692 85208608 ~ 85234446 (+) False xirp1
TU859074 other upstream 66972 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 67569 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 126637 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 442825 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 696442 84303470 ~ 84308274 (+) True G755602
TU859221 other downstream 251866 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 947052 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 1112747 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 1225435 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 1526237 86531153 ~ 86532379 (+) True G757902

Expression Profile