RNA id: TU859174


Basic Information

Item Value
RNA id TU859174
length 2228
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G756388
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85163613 ~ 85165864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATACATGCAGTAGCGTTCTGTCATACATGCAGTAGCATTCTGTCATACATGCAGTAGCGTTCTGTCATACATGCAGTAGGCTAATAAAGGTTAGCTGTCTGTTCCACATTGTTGGGGTTTCTAGTTCTGTCATACATGCAGTAGCCTAATAAAAGATAGCTCTCTCTGTTCAACATTGTTCCAAAAGATTTATGTTTATTCATTGATAGAAGATTTGACTTTGCTTTAAAATACAAGATTCAGTAACACATTGTAAATGCTAATATATTTCCATAAAAAATAACTTAAAAAAGACAGACAAATGCAAAACGTTCTTAAATACACGGAGCACATATCAGATTCCATTGATATTTTTTTGCAAAGCAATGACTTTTCAGTTTGTCAATTAAGCCAAaacgaagaagaaaaaaaaataataagttacctatggtggaggagagagatggatctCCAAAACATGAAACTATGGCGTTTTGACACGAATAAACAGCAATACATTTAGCTAAATAATTTCATGTAGGCCAATACACAGTAGTAGTACTACAATTAATAATAAATGACAAGATGTTGTAATTCTGAATATTGTGCCACAGTCTTGATTGAAACAAAACTTCACATGAATTACAATTCATAAAATGTCATGAATGTCTCCATCTGTCCGTCTCACGGTGATGCCAAACAATCCCTCCGCTAAAAGAAAAAAGTACatcaagtaaataaataaattaaaccattgttctttttttttaatgaatattCATTTATAAATAACTGCTGGaaagcacatttaaaaaaaaaaaaaaacgtgaacatcatgaaacatgttATGTCTTGTAGTGATGACATTTAGGGTTTTGTGATATTTGCTCATGTATAATATTGTCTAAATCATGAATAACCATAATGTGCCTCTTCTTCTTCAACAACATCATATTTAATAAATCTGAATAAAATATATCATACTGTACATTTAAATATCTTATTAAAATACAAACTGTAGACTGTACATATTCATGTTCTTCTAGGCTCATTTTAAATGTCCATGAGCCAATCAGGTCCCACAGAACCCTGACAGTTCAGCCCATTGGTCACTGAATTACCTGCTCCAATAACGGATTGTCTGTGGATGAAGGAGTTTCTATTGGATCGGATAAGCCAATCAGAGACTCCAGGAGGCAGGTGCCAGCTGTCTCGTTGAACTGTGGGACATTTGCAGAACTCAACACCTGCAGATGAAGGAAGTTGTCAGGGTGCTTGTGGCCTTTGAATGAGTTGTGTAGAGGGGCTGAGCTATAGTCTGTAGGGAAGTTGTCAAAGAGCTCCAAATCCGAGTCAGAGGAGAGACTGAGGTCCATGTAGCTGCTGGATGAGTAGTCTATGGAAGGAGAGGGTGTGTTGGGGTAGTCCTGGAGGGGACTGTGGGTGAACAGGGCCGTCGCTTGGTTGGCATTGTCGTCTTGATACTCGGCCATGAAAGAACCGCCGCTGTAGCTGttgtctgcgtgtctgtgtgtcttctCTGTGTACctttgtgtgttgtctgtgtgtctgtgtgtcttctcTGTGTACCTTtgtgtattgtctgtgtgtgAACTGGGTGCGTTGGACAGGCCGAGGGTGGCTGTGGTGTCTTTACAGAGACCGTACGACGTGTCGAAGCCGGTGACACACTGGGGACGGTGTGGCGACGGTTGTCTCCCTGGCTTTGTGCCACTTTCACTGCCCATGGAGCAGTCCTCATTGTCAGAGTCACAGAAGCTGAGGACACAAGCCAGACCTCCGTCGTCCACATCCAAGAGAGGCTGGTGCTCTCGAGGGCTTCCTCCCACGTCGGAGTCCTCGCTCTGGGCAGAGACGCCGGACGAGTCGGTCATGTCACTACAGCAACTATTCTCAACCTCACACAGTTCAGAGCTGAAGTGGAAGGTAGGGGtggtggggatggagagagggaggcccTCTTCTTCCAGGGTGAACCCGAAGGGGCATCTCACCTCCTGGGCACTGTCCTGCTGATGCTGTCCCTGGTCCTGGAGCTCCTGGAGATCGTCTTGGTTCTCCTCTGGGTCTCTCCTCTGGGTTAGTATCTCATCCTGCAGTCTCCTCTCCAGCTCCAGCCTCATGACAGTGTGTATGTAGTGGGTCTGAACCCGTCTGGAGTTGAACTCCACGCGACCGTTAGTATTCCCACAGCCATCCTTTGTGCAGCCGCAAGGGAAGTTGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859154 lncRNA upstream 32094 85115535 ~ 85131519 (+) True G756372
TU859133 lncRNA upstream 109183 85053791 ~ 85054430 (+) True G756352
TU859129 lncRNA upstream 117911 85045379 ~ 85045702 (+) True G756348
TU859110 lncRNA upstream 158697 85004716 ~ 85004916 (+) True G756329
TU859094 lncRNA upstream 200146 84961547 ~ 84963467 (+) False G756314
TU859176 lncRNA downstream 2908 85168772 ~ 85172233 (+) True G756389
TU859181 lncRNA downstream 7948 85173812 ~ 85174459 (+) False G756391
TU859182 lncRNA downstream 7948 85173812 ~ 85174459 (+) True G756391
TU859222 lncRNA downstream 23930 85189794 ~ 85190508 (+) True G756409
TU859224 lncRNA downstream 29275 85195139 ~ 85195403 (+) True G756411
XM_036986590.1 mRNA upstream 19236 85124558 ~ 85144377 (+) False LOC110530843
XM_036986591.1 mRNA upstream 19236 85124558 ~ 85144377 (+) False LOC110530843
XM_036986592.1 mRNA upstream 19236 85124558 ~ 85144377 (+) False LOC110530843
XR_005052979.1 mRNA upstream 19236 85124558 ~ 85144377 (+) True LOC110530843
XM_036986589.1 mRNA upstream 56096 85002397 ~ 85107517 (+) True LOC110531035
XM_036986598.1 mRNA downstream 42744 85208608 ~ 85234446 (+) False xirp1
XM_036986595.1 mRNA downstream 43039 85208903 ~ 85227631 (+) False xirp1
XM_036986596.1 mRNA downstream 43082 85208946 ~ 85227631 (+) False xirp1
XM_036986597.1 mRNA downstream 49909 85215773 ~ 85227631 (+) True xirp1
XR_005052982.1 mRNA downstream 91162 85257026 ~ 85263399 (+) False LOC118965572
TU859074 other upstream 225869 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 226466 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 285534 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 601722 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 855339 84303470 ~ 84308274 (+) True G755602
TU859221 other downstream 90918 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 786104 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 951799 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 1064487 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 1365289 86531153 ~ 86532379 (+) True G757902

Expression Profile