RNA id: TU859176


Basic Information

Item Value
RNA id TU859176
length 3395
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G756389
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85168772 ~ 85172233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACACCAACCACCCACAGACCCCCCCACACACCAACCACCCACAGACCCCCCCCATACCCAAACTACTCCAACAACGAGTATACAgcagaggaggctgctgagggcaggacagctcatccataatgactggaatggagccAGTGGAATGGgaacctggaaaccatggaaaccatgtgtttgatgtatttgatacaattCCACTGACTCTGCTCCAACTATTACCACGATGCCTGTGGTATATATTATCAGTTCTCTATGACTGACCAGCTGCTATGTCTGACCAGTAGTATGGAGCTGCTGTGTCTGACCAATAGTATGGAGCTGCTATGACTGACCAGTAGTATGGAGCTGCTATGTCTGACCAATAGTATGGAGCTGCTATGTCTGACCAGTAGTATGGAGCTGCTATGTCTGACCAGTAGTATGGAGCTGCTGTGTCTGACCAATAGTATGGAGCTGCTATGACTGACCAGTAGTATGGAGCTGCTATGTCTGACCAATAGTATGGAGCTGCTATGTCTGACCAGTAGTATGGAGCTGCTATGACTGACCAGTAGTATGGAGCTGCTATGTCTGACCAATAGTATGGAGCTGCTATGTCTGACCAGTAGTATGGAGCTGCTGTGTCTGACCAATAGTATGGAGCTGCTATGACTGACCAGTAGTATGGAGCTGCTATGTCTGACCAATAGTATGGAGCTGCTATGTCTGACCAGTAGTATGGGGCTGCTGTGTCTGACCAATAGTATGGAGCTGCTATGTCTGACCAATAGTATGGAGCTGCTATGTCTGACCAATAGTATGGAGCTGCTATGTCTGACCAGTACTATGGAGCTGCTATGTCTGACCAATAGTATGGAGCTGCTATGACTGACCAGTAGTATGGAGCTGCTATGTCTGACCAATAGTATGGAGCTGCTATGACTGCTGTTCTTCCTCCATTTCAATGTTAAAGGCATAGTTAATTTGaattacaaaatgacatattggtttccttaccttgTAACCAgtttatggacaaggtatgacagcaatccatggtttggttttgtttacctgaCCACTGTTTCAAATGGTAACGTTTTTTTgttgcatttgtggcacaaatccaatgcaagtcaatggtaccTATATTAACATTTTCATGGTTTCATGTCAAAATCATCCTGGACTTAATttcaaattatatttaaaaaaaaataatgttggaAGAAAGCTAATCTCATCTGTTTTCTAACAACATAAAgattcagaacaatctgagatggtgggtggaATGACCCATATTCTTGAGGTGGAATgacccacatacagtacatgacgTTTAAGTTACTGTAAGAttagacggcctatagggaggaggtcagagacctggccgggtggtgtcagaataacaacctatccctcaacgtgatcaagagatgattgtggactacaggaaaaggaggactgagcacgtccccattatcatcgactgggctgtagtggagcaggttgagagcttcaagttcctaggtgtccacatcaccaacaaactatcatgggtcaaacacaccaagacagttgtgaagagggcacgacaaagcctattcccctcaggagactgaaaagatttggcatgggtccccagatcctcaaagttctacagctgcaccatcgagagcatcctgacaggttgcatcactgcctggtatgtcaactgctcggcctccgactgcaaggcgctacagagggtagtgcttacggcccagtacatcactggggccaagcttcctgacatccaggacctctataccaggcggtgtcagaggaaggccctaaaagtcaaagactccagccaccctagtcatagagcaccaagtctaggtccaagaggctcgttaacagcttctagccccaagccataagacttgtgaacagctaaccaaatgccccccccccccgcgcatttttaagctgctgctactctctgtttattatctatgcatagtcaccttacctctacctacatgtacatattacctcaattacctcggctaacctgtacccccgcacattgactatgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccggtacccactgtatatagcctccacattgactctgtaccagtaccccctgtagatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgtaataccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactcagtaccgtaataccctgtatagatcctcgttactgttattttattgtcgctctttaactattattattattattttttcattttatttattgtttacttcagtttatttagtaaatactttcttaacacttattttttcttaactgcattgttggtcaggggctcgtaagtaagcatttcactctaaaatatacacctgttgtaatcggcgcatgtgacaattaacatttgatttgattatttgattttgattttaatTTAAGCCAATGGGATGCAAGAAACTATAACCAGAATGGTCAGTTTGCACTCGACTGGGACAAACACAGGACAGCATGCTTTTTATTTCAGGGGTAGGCTTAATCTGGTTCACTAGTCGATTAGAAGTCTAGAATACTTActctctgtctgagtgtctcCAGCCTCTCCTCCCTCAGTCTATCTCTGAGTCTCTCCCTGCGCCTCCTTCGTCTCTCCTGGGTGTGCTCTGCCAGTGTGTACCTCCGGAGGGCGCTGTGCTTCCTCACCATGCCCAGGGTGGCACCGCCGCGCCTCGGAACGCTGGTGAAACCCTGGCAACGCTGGAACAGGAACACCGTCACCTGGTTGAAGACAACGCTGTTGCTATGGCCGCTGTTGTCATGGGAAAGTTTTGGGCTCTTCAGGATGGAGCGGACTGTTggtggacgaggaggaggaggaggaggaggaaacaggGTTTAGAGTCACGACAAGAAGTTGGTGTATTCTATGCCTTTGTCAATGTCAGCTTATTAGAGCTACTGCATATCAGTTCTGAATGTAGCGTTTTgatgtctctcttgtcgtgatgtgtgttttgtcctatatatatatatatatatatatatatttagttttttttaattgtatttttaatcccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859174 lncRNA upstream 2908 85163613 ~ 85165864 (+) False G756388
TU859173 lncRNA upstream 2908 85163811 ~ 85165864 (+) True G756388
TU859154 lncRNA upstream 37253 85115535 ~ 85131519 (+) True G756372
TU859133 lncRNA upstream 114342 85053791 ~ 85054430 (+) True G756352
TU859129 lncRNA upstream 123070 85045379 ~ 85045702 (+) True G756348
TU859181 lncRNA downstream 1579 85173812 ~ 85174459 (+) False G756391
TU859182 lncRNA downstream 1579 85173812 ~ 85174459 (+) True G756391
TU859222 lncRNA downstream 17561 85189794 ~ 85190508 (+) True G756409
TU859224 lncRNA downstream 22906 85195139 ~ 85195403 (+) True G756411
TU859228 lncRNA downstream 27849 85200082 ~ 85200317 (+) True G756414
XM_036986590.1 mRNA upstream 24395 85124558 ~ 85144377 (+) False LOC110530843
XM_036986591.1 mRNA upstream 24395 85124558 ~ 85144377 (+) False LOC110530843
XM_036986592.1 mRNA upstream 24395 85124558 ~ 85144377 (+) False LOC110530843
XR_005052979.1 mRNA upstream 24395 85124558 ~ 85144377 (+) True LOC110530843
XM_036986589.1 mRNA upstream 61255 85002397 ~ 85107517 (+) True LOC110531035
XM_036986598.1 mRNA downstream 36375 85208608 ~ 85234446 (+) False xirp1
XM_036986595.1 mRNA downstream 36670 85208903 ~ 85227631 (+) False xirp1
XM_036986596.1 mRNA downstream 36713 85208946 ~ 85227631 (+) False xirp1
XM_036986597.1 mRNA downstream 43540 85215773 ~ 85227631 (+) True xirp1
XR_005052982.1 mRNA downstream 84793 85257026 ~ 85263399 (+) False LOC118965572
TU859074 other upstream 231028 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 231625 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 290693 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 606881 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 860498 84303470 ~ 84308274 (+) True G755602
TU859221 other downstream 84549 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 779735 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 945430 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 1058118 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 1358920 86531153 ~ 86532379 (+) True G757902

Expression Profile