RNA id: TU859181


Basic Information

Item Value
RNA id TU859181
length 500
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G756391
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85173812 ~ 85174459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtagctACATCATTCTGAGATGTGTTCATGTAGCTACATCATTCTGAGATGTGTTAAATGTAGCTACATCATTCTGAGATGTGTTCATGTAGCTACATCATTCTGAGATGTGTTCATGTAGCTACATCATTCTGAGATGTGTTCATGTAGCTACATCATTCTGAGATGTGTTCATGTAGCTACATCATTCTGAGATGTGTTCATGTAGCTACCTCAATTCTGAGATGTGTTAAATGTAGCTACATCATTCTGAGATGTGTTAAATGTAGCTACATCATTCTGAGATGTGTTCATGTAGCTACATCATTCTGAGATGTGTTCATGTAGCTACATCATTCTGAGATGTTCATGTAGCTACATCATTCTGAGATGTGTTAAATGTAGCTACATCATTCTGAGATGTGTTCATGTAGCTACATCATTCTTATTGGCTTACTGGGTAGATGGGAGGTAGGTGAGTCAGAGGTGAAGTCTTGGTTGTCACTGTTGCGGCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859176 lncRNA upstream 1579 85168772 ~ 85172233 (+) True G756389
TU859174 lncRNA upstream 7948 85163613 ~ 85165864 (+) False G756388
TU859173 lncRNA upstream 7948 85163811 ~ 85165864 (+) True G756388
TU859154 lncRNA upstream 42293 85115535 ~ 85131519 (+) True G756372
TU859133 lncRNA upstream 119382 85053791 ~ 85054430 (+) True G756352
TU859222 lncRNA downstream 15335 85189794 ~ 85190508 (+) True G756409
TU859224 lncRNA downstream 20680 85195139 ~ 85195403 (+) True G756411
TU859228 lncRNA downstream 25623 85200082 ~ 85200317 (+) True G756414
TU859230 lncRNA downstream 29106 85203565 ~ 85203778 (+) True G756416
TU859233 lncRNA downstream 32533 85206992 ~ 85207403 (+) True G756419
XM_036986590.1 mRNA upstream 29435 85124558 ~ 85144377 (+) False LOC110530843
XM_036986591.1 mRNA upstream 29435 85124558 ~ 85144377 (+) False LOC110530843
XM_036986592.1 mRNA upstream 29435 85124558 ~ 85144377 (+) False LOC110530843
XR_005052979.1 mRNA upstream 29435 85124558 ~ 85144377 (+) True LOC110530843
XM_036986589.1 mRNA upstream 66295 85002397 ~ 85107517 (+) True LOC110531035
XM_036986598.1 mRNA downstream 34149 85208608 ~ 85234446 (+) False xirp1
XM_036986595.1 mRNA downstream 34444 85208903 ~ 85227631 (+) False xirp1
XM_036986596.1 mRNA downstream 34487 85208946 ~ 85227631 (+) False xirp1
XM_036986597.1 mRNA downstream 41314 85215773 ~ 85227631 (+) True xirp1
XR_005052982.1 mRNA downstream 82567 85257026 ~ 85263399 (+) False LOC118965572
TU859074 other upstream 236068 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 236665 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 295733 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 611921 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 865538 84303470 ~ 84308274 (+) True G755602
TU859221 other downstream 82323 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 777509 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 943204 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 1055892 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 1356694 86531153 ~ 86532379 (+) True G757902

Expression Profile