RNA id: TU859222


Basic Information

Item Value
RNA id TU859222
length 365
lncRNA type intronic
GC content 0.53
exon number 2
gene id G756409
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85189794 ~ 85190508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccacacttcactgccatatagtggaccccatactccACTGCCAtttagtggaccccacacttcactgccatatagtggaccccatactccactgccatatagtggaccccacactccactgccatatagtggaccccacacttcactgccatatagtggaccccacacttcactgccatatagtggaccccacacttcactgccatatagtggaccccacacctcactGCCATATAATGCTATTGAAGGTCCCTGTGGAGCTGCAGGTTGGAGTTCCCTGTGGAGCTGCAGGTTGAAGGTCCCTGTGGAGCTGCAGGTTGAAGTTCCCTGTTGAGCTGCAGGTTGAAGTTCCCTGTTGAGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859181 lncRNA upstream 15335 85173812 ~ 85174459 (+) False G756391
TU859182 lncRNA upstream 15335 85173812 ~ 85174459 (+) True G756391
TU859176 lncRNA upstream 17561 85168772 ~ 85172233 (+) True G756389
TU859174 lncRNA upstream 23930 85163613 ~ 85165864 (+) False G756388
TU859173 lncRNA upstream 23930 85163811 ~ 85165864 (+) True G756388
TU859224 lncRNA downstream 4631 85195139 ~ 85195403 (+) True G756411
TU859228 lncRNA downstream 9574 85200082 ~ 85200317 (+) True G756414
TU859230 lncRNA downstream 13057 85203565 ~ 85203778 (+) True G756416
TU859233 lncRNA downstream 16484 85206992 ~ 85207403 (+) True G756419
TU859234 lncRNA downstream 17059 85207567 ~ 85207825 (+) True G756420
XM_036986590.1 mRNA upstream 45417 85124558 ~ 85144377 (+) False LOC110530843
XM_036986591.1 mRNA upstream 45417 85124558 ~ 85144377 (+) False LOC110530843
XM_036986592.1 mRNA upstream 45417 85124558 ~ 85144377 (+) False LOC110530843
XR_005052979.1 mRNA upstream 45417 85124558 ~ 85144377 (+) True LOC110530843
XM_036986589.1 mRNA upstream 82277 85002397 ~ 85107517 (+) True LOC110531035
XM_036986598.1 mRNA downstream 18100 85208608 ~ 85234446 (+) False xirp1
XM_036986595.1 mRNA downstream 18395 85208903 ~ 85227631 (+) False xirp1
XM_036986596.1 mRNA downstream 18438 85208946 ~ 85227631 (+) False xirp1
XM_036986597.1 mRNA downstream 25265 85215773 ~ 85227631 (+) True xirp1
XR_005052982.1 mRNA downstream 66518 85257026 ~ 85263399 (+) False LOC118965572
TU859074 other upstream 252050 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 252647 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 311715 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 627903 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 881520 84303470 ~ 84308274 (+) True G755602
TU859221 other downstream 66274 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 761460 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 927155 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 1039843 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 1340645 86531153 ~ 86532379 (+) True G757902

Expression Profile