RNA id: TU859230


Basic Information

Item Value
RNA id TU859230
length 214
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G756416
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85203565 ~ 85203778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctgtacagtgtgtgcaaatgtagaagaataGGGAGGTAGGCAAGAAATAGGCCTTAGAGGTACAAGTTAATtcagcattaatactggagtgatagatgtgcagatgatgatgtgcaagtagagatactagggtgcaaaagagcaagagggtaagtattaatatggggatgaggtagttgggtgtgctatttacagatgggctgtgtacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU859228 lncRNA upstream 3248 85200082 ~ 85200317 (+) True G756414
TU859224 lncRNA upstream 8162 85195139 ~ 85195403 (+) True G756411
TU859222 lncRNA upstream 13057 85189794 ~ 85190508 (+) True G756409
TU859181 lncRNA upstream 29106 85173812 ~ 85174459 (+) False G756391
TU859182 lncRNA upstream 29106 85173812 ~ 85174459 (+) True G756391
TU859233 lncRNA downstream 3214 85206992 ~ 85207403 (+) True G756419
TU859234 lncRNA downstream 3789 85207567 ~ 85207825 (+) True G756420
TU859246 lncRNA downstream 33294 85237072 ~ 85237295 (+) True G756425
TU859247 lncRNA downstream 38934 85242712 ~ 85242943 (+) True G756426
TU859248 lncRNA downstream 42526 85246304 ~ 85246590 (+) True G756427
XM_036986590.1 mRNA upstream 59188 85124558 ~ 85144377 (+) False LOC110530843
XM_036986591.1 mRNA upstream 59188 85124558 ~ 85144377 (+) False LOC110530843
XM_036986592.1 mRNA upstream 59188 85124558 ~ 85144377 (+) False LOC110530843
XR_005052979.1 mRNA upstream 59188 85124558 ~ 85144377 (+) True LOC110530843
XM_036986589.1 mRNA upstream 96048 85002397 ~ 85107517 (+) True LOC110531035
XM_036986598.1 mRNA downstream 4830 85208608 ~ 85234446 (+) False xirp1
XM_036986595.1 mRNA downstream 5125 85208903 ~ 85227631 (+) False xirp1
XM_036986596.1 mRNA downstream 5168 85208946 ~ 85227631 (+) False xirp1
XM_036986597.1 mRNA downstream 11995 85215773 ~ 85227631 (+) True xirp1
XR_005052982.1 mRNA downstream 53248 85257026 ~ 85263399 (+) False LOC118965572
TU859074 other upstream 265821 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 266418 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 325486 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 641674 84558786 ~ 84561891 (+) True G756134
TU858258 other upstream 895291 84303470 ~ 84308274 (+) True G755602
TU859221 other downstream 53004 85256782 ~ 85264093 (+) True LOC118965572
TU860498 other downstream 748190 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 913885 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 1026573 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 1327375 86531153 ~ 86532379 (+) True G757902

Expression Profile