RNA id: TU860369



Basic Information


Item Value
RNA id TU860369
length 368
lncRNA type intronic
GC content 0.43
exon number 2
gene id G757354
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85799896 ~ 85800353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtgtattggtgtgtattggtgtgtattggtgtgtattggtgtgtattgatgtgtattggtgtgtattggtgtgtattggtgtgtattgatgtgtattggtgtgtattggtgtgtatcggtgtgtatcggtgtgtatcGGTGTGTACTGGTGTGTTTCGGTGTGTATCGGTGTGTACTGGTGTGTATCGGTGTGTACtggtgtgtattggtgtgtattggtgtgtatcGGTGTGTATCGGTGTGTACTGGTGTGAAGTGAAACGGATGTCTGCAATGGTAAACATGGTGAGAGTTGGTTTTAATATGGCTGGTACAACAACAACATCTGACAGTGAAGCATGTGTGTTAGGCTCCGTTTTAAAGGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU860241 lncRNA upstream 117307 85682344 ~ 85682589 (+) True G757243
TU860233 lncRNA upstream 135756 85663104 ~ 85664140 (+) True G757235
TU860230 lncRNA upstream 147342 85652177 ~ 85652554 (+) True G757232
TU860199 lncRNA upstream 152056 85647608 ~ 85647840 (+) True G757226
TU860193 lncRNA upstream 156817 85642867 ~ 85643079 (+) True G757220
TU860373 lncRNA downstream 4130 85804483 ~ 85805327 (+) True G757358
TU860394 lncRNA downstream 62826 85863179 ~ 85863889 (+) True G757378
TU860360 lncRNA downstream 81346 85881699 ~ 85882385 (+) True G757346
TU860359 lncRNA downstream 82198 85882551 ~ 85883276 (+) True G757345
TU860456 lncRNA downstream 94636 85894989 ~ 85895206 (+) True G757439
XM_021614109.2 mRNA upstream 38938 85739005 ~ 85760958 (+) True LOC110530826
XM_036986893.1 mRNA upstream 86690 85709654 ~ 85713206 (+) True LOC118965641
XM_021614110.2 mRNA upstream 91126 85690520 ~ 85708770 (+) True LOC110530827
XM_021614113.2 mRNA upstream 136839 85658600 ~ 85663057 (+) True LOC110530829
XR_005052988.1 mRNA upstream 161842 85532159 ~ 85638054 (+) False vipr1a
XM_036986621.1 mRNA downstream 551921 86352274 ~ 86555806 (+) True LOC110530844
XM_036986626.1 mRNA downstream 769347 86569700 ~ 86583738 (+) True LOC110504868
XM_036986627.1 mRNA downstream 791157 86591510 ~ 86627902 (+) False LOC110530851
XM_036986641.1 mRNA downstream 1111824 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 1202826 87003179 ~ 87406445 (+) True LOC110530822
TU859221 other upstream 535803 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 862152 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 862749 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 921817 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 1238005 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 151615 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 317310 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 429998 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 730800 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 834431 86634784 ~ 86635460 (+) True G758045

Expression Profile