RNA id: TU860360



Basic Information


Item Value
RNA id TU860360
length 687
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G757346
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85881699 ~ 85882385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGTCAAACTTGATGAAGCTGGTCTTCTCTTACCTTTGTGTTGTTATTGATAACGTCACTGGTTAGTCTGACAGATTAGTCAATTATTAAACACTCTTGGCGCGAAAGCAAGAGATTTTTCTGCTTTTCTACACCCACAGTGTTTGAAGACTGTACACAATGTTTTGTTGTGCTAAAATGATTCCATTATGTGACCGCTATGCTCCCCTTATATACAGTGAGttccagaagtattgggacagtgatatTTGCATCTGCATtgctttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtaagaagggctatataaatacatttgattggttgattgatttgttgttgttgttttggctctgtactctgtactctgtaAATGAAACAATGACTGAGGTTCAattgcagactgtcagctttaattttagggtattttcatccatatcaggtgaacctTTTTtttgacacaatacattatttatcattaattttggttgggcacaaaataatctgaaacacaaccaaaacaaacagcaaatgcatccaacaaatgtgtagagtcacTAGCTTGACGTAGTCATTactgtgctatgaatatgggaccaaatactacaccttctactactttaatacacatataagtgaatttgtcccaatacttttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU860394 lncRNA upstream 17810 85863179 ~ 85863889 (+) True G757378
TU860373 lncRNA upstream 76372 85804483 ~ 85805327 (+) True G757358
TU860369 lncRNA upstream 81346 85799896 ~ 85800353 (+) True G757354
TU860241 lncRNA upstream 199110 85682344 ~ 85682589 (+) True G757243
TU860233 lncRNA upstream 217559 85663104 ~ 85664140 (+) True G757235
TU860359 lncRNA downstream 166 85882551 ~ 85883276 (+) True G757345
TU860456 lncRNA downstream 12604 85894989 ~ 85895206 (+) True G757439
TU860471 lncRNA downstream 24603 85906988 ~ 85908033 (+) True G757449
TU860473 lncRNA downstream 25783 85908168 ~ 85909182 (+) True G757450
TU860474 lncRNA downstream 28637 85911022 ~ 85911241 (+) True G757451
XM_036986618.1 mRNA upstream 482 85793000 ~ 85881217 (+) True LOC110531032
XM_021614109.2 mRNA upstream 120741 85739005 ~ 85760958 (+) True LOC110530826
XM_036986893.1 mRNA upstream 168493 85709654 ~ 85713206 (+) True LOC118965641
XM_021614110.2 mRNA upstream 172929 85690520 ~ 85708770 (+) True LOC110530827
XM_021614113.2 mRNA upstream 218642 85658600 ~ 85663057 (+) True LOC110530829
XM_036986621.1 mRNA downstream 469889 86352274 ~ 86555806 (+) True LOC110530844
XM_036986626.1 mRNA downstream 687315 86569700 ~ 86583738 (+) True LOC110504868
XM_036986627.1 mRNA downstream 709125 86591510 ~ 86627902 (+) False LOC110530851
XM_036986641.1 mRNA downstream 1029792 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 1120794 87003179 ~ 87406445 (+) True LOC110530822
TU859221 other upstream 617606 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 943955 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 944552 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 1003620 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 1319808 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 69583 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 235278 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 347966 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 648768 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 752399 86634784 ~ 86635460 (+) True G758045

Expression Profile