RNA id: TU860359



Basic Information


Item Value
RNA id TU860359
length 726
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G757345
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85882551 ~ 85883276 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcaacaaatgtgttactgtcccaatacttttagaGATCACTGTATGACATTACCTGTTTCCTGTATAACAGGGTCCCCCCCCccgaaaaaaaatataaaaataagttttaaattgttggacataaaattattttttttaaaaacccaccagcaaatcagctccaaattATGTTATTTTCGAAAATCTATTCCAAAGTATTCCCCATGCATAATCGAGAGAAATATGTGATCATATATATAAATGTAAAAGTGATAAAGTGTTTGTCAAATATGGTATCTGTTTGTGGCTTCTTGCAGTCactttgcagtctacaaatgatttgtaatgatGTTCCCGGGCCCTCTGATCTCTGCTATATAAGAACAATGACTGATATTGTTATTGATTCCTGTTGAATGTGACAATCATCCCTCTATACTGTACCCATTGTTCACCTGTGTTTTTTCTCATCAGGAGATTTGTTTAAATAGCAATTCAGTAGAAAAAAACAAAGCATATTTAGCCTCCAGATTATGGCCAAGTATTATCTCCTGTACATCATTTTGATGGGTGGCCATGTAAACTTTGCCGGATCGAGTTTGACGTCGACCTAAAATCATTACAGAGTCGAACTGAGAGACGGTTTCTTAATTTTGGCTTATTCAAGACAATCCAATTTTGTTCAGTTTGAGTGAAAAGACCACTTGATGCTTAAAGCAAATAcatatttaatgttcatgtttttT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU860360 lncRNA upstream 166 85881699 ~ 85882385 (+) True G757346
TU860394 lncRNA upstream 18662 85863179 ~ 85863889 (+) True G757378
TU860373 lncRNA upstream 77224 85804483 ~ 85805327 (+) True G757358
TU860369 lncRNA upstream 82198 85799896 ~ 85800353 (+) True G757354
TU860241 lncRNA upstream 199962 85682344 ~ 85682589 (+) True G757243
TU860456 lncRNA downstream 11713 85894989 ~ 85895206 (+) True G757439
TU860471 lncRNA downstream 23712 85906988 ~ 85908033 (+) True G757449
TU860473 lncRNA downstream 24892 85908168 ~ 85909182 (+) True G757450
TU860474 lncRNA downstream 27746 85911022 ~ 85911241 (+) True G757451
TU860483 lncRNA downstream 45034 85928310 ~ 85928587 (+) True G757460
XM_036986618.1 mRNA upstream 1334 85793000 ~ 85881217 (+) True LOC110531032
XM_021614109.2 mRNA upstream 121593 85739005 ~ 85760958 (+) True LOC110530826
XM_036986893.1 mRNA upstream 169345 85709654 ~ 85713206 (+) True LOC118965641
XM_021614110.2 mRNA upstream 173781 85690520 ~ 85708770 (+) True LOC110530827
XM_021614113.2 mRNA upstream 219494 85658600 ~ 85663057 (+) True LOC110530829
XM_036986621.1 mRNA downstream 468998 86352274 ~ 86555806 (+) True LOC110530844
XM_036986626.1 mRNA downstream 686424 86569700 ~ 86583738 (+) True LOC110504868
XM_036986627.1 mRNA downstream 708234 86591510 ~ 86627902 (+) False LOC110530851
XM_036986641.1 mRNA downstream 1028901 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 1119903 87003179 ~ 87406445 (+) True LOC110530822
TU859221 other upstream 618458 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 944807 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 945404 84936066 ~ 84937147 (+) False G756298
TU859041 other upstream 1004472 84876994 ~ 84878079 (+) True G756271
TU858875 other upstream 1320660 84558786 ~ 84561891 (+) True G756134
TU860498 other downstream 68692 85951968 ~ 86028274 (+) True G757472
TU860712 other downstream 234387 86117663 ~ 86117948 (+) True G757663
TU860829 other downstream 347075 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 647877 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 751508 86634784 ~ 86635460 (+) True G758045

Expression Profile