RNA id: TU860722



Basic Information


Item Value
RNA id TU860722
length 940
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G757668
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 86124275 ~ 86125214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccaacaatgcagtaataacaagtaatctaactaacaattccaaaaatactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtatcgagtacagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataaggataccgtcgatgatatagagtacagtatatacgtatgcatatgagatgaataatgtagggtaagtaacatttatataaggtagcattgtttaaagtggctagtgatatatttacatcatttcccatcaattcccattattaaagtggctggagttgagtcagtgtcagtgtgttggcagcagccactcagtgttagtggtggctgtttaacagtctgatggccttgagatagaagctgtttttcagtctctcggtcccagctttgatgcacctgtactgacctcgccttctggatgatagcggggtgaacaggcagtggctcgggtggttgatgtccttgatgatctttatggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgcccccggtgatgcgttgtgcggacctcactaccctctggagagccttacggttgagggcggtgcagttgccataccaggcggtgatacagcccgccaggatgctctcgattgtgcatctgtagaagtttgtgagtgcttttggtgacaagctgaatttcttcagcctcctgaggttgaagaggcgctgctgcgccttcttcacgatgctgtctgtgtgagtggaccaattcagtttgtctgtgatgtgtatgccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU860574 lncRNA upstream 41351 86077369 ~ 86082924 (+) True G757538
TU860575 lncRNA upstream 41754 86078946 ~ 86082521 (+) True G757539
TU860499 lncRNA upstream 163022 85957852 ~ 85961253 (+) False G757473
TU860502 lncRNA upstream 163022 85957852 ~ 85961253 (+) False G757473
TU860503 lncRNA upstream 163022 85957852 ~ 85961253 (+) True G757473
TU860725 lncRNA downstream 4446 86129660 ~ 86129964 (+) True G757671
TU860731 lncRNA downstream 6572 86131786 ~ 86132111 (+) True G757677
TU860732 lncRNA downstream 7222 86132436 ~ 86132648 (+) True G757678
TU860733 lncRNA downstream 8869 86134083 ~ 86134339 (+) True G757679
TU860741 lncRNA downstream 20527 86145741 ~ 86148880 (+) True G757687
XM_036986618.1 mRNA upstream 243058 85793000 ~ 85881217 (+) True LOC110531032
XM_021614109.2 mRNA upstream 363317 85739005 ~ 85760958 (+) True LOC110530826
XM_036986893.1 mRNA upstream 411069 85709654 ~ 85713206 (+) True LOC118965641
XM_021614110.2 mRNA upstream 415505 85690520 ~ 85708770 (+) True LOC110530827
XM_021614113.2 mRNA upstream 461218 85658600 ~ 85663057 (+) True LOC110530829
XM_036986621.1 mRNA downstream 227060 86352274 ~ 86555806 (+) True LOC110530844
XM_036986626.1 mRNA downstream 444486 86569700 ~ 86583738 (+) True LOC110504868
XM_036986627.1 mRNA downstream 466296 86591510 ~ 86627902 (+) False LOC110530851
XM_036986641.1 mRNA downstream 786963 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 877965 87003179 ~ 87406445 (+) True LOC110530822
TU860712 other upstream 6327 86117663 ~ 86117948 (+) True G757663
TU860498 other upstream 96001 85951968 ~ 86028274 (+) True G757472
TU859221 other upstream 860182 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 1186531 84936066 ~ 84937744 (+) False G756298
TU859075 other upstream 1187128 84936066 ~ 84937147 (+) False G756298
TU860829 other downstream 105137 86230351 ~ 86231459 (+) True G757754
TU860993 other downstream 405939 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 509570 86634784 ~ 86635460 (+) True G758045
TU861389 other downstream 786962 86912176 ~ 86920509 (+) False ly97.3
TU861390 other downstream 786962 86912176 ~ 86920509 (+) False ly97.3

Expression Profile