RNA id: TU860928


Basic Information

Item Value
RNA id TU860928
length 217
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G757841
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 86328639 ~ 86328855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaccattcattaacagattcagctgaggtctagaacgtAGGAAATGATTTGTACCAATTGCAATGCTCTTAGTTTGAGATATATAAGTATGTCATGTTGATTCATACACAGAGCCCACTGGACATAgacgtcagttcaatgtctagatTTGATGTACATTTGGCTGAGTTTTCTactaatgtgaaatcaacaaaaaaagatAAACCGTGTCAtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU860828 lncRNA upstream 103952 86224283 ~ 86224687 (+) True G757753
TU860827 lncRNA upstream 105102 86223212 ~ 86223537 (+) True G757752
TU860821 lncRNA upstream 111513 86216222 ~ 86217126 (+) True G757746
TU860763 lncRNA upstream 138087 86190223 ~ 86190552 (+) True G757698
TU860744 lncRNA upstream 171357 86156958 ~ 86157282 (+) True G757690
TU860929 lncRNA downstream 947 86329802 ~ 86330062 (+) True G757842
TU860931 lncRNA downstream 2468 86331323 ~ 86331523 (+) True G757844
TU860946 lncRNA downstream 38286 86367141 ~ 86367761 (+) True G757859
TU860973 lncRNA downstream 150380 86479235 ~ 86480043 (+) True G757884
TU860998 lncRNA downstream 220176 86549031 ~ 86549480 (+) True G757907
XM_036986618.1 mRNA upstream 447422 85793000 ~ 85881217 (+) True LOC110531032
XM_021614109.2 mRNA upstream 567681 85739005 ~ 85760958 (+) True LOC110530826
XM_036986893.1 mRNA upstream 615433 85709654 ~ 85713206 (+) True LOC118965641
XM_021614110.2 mRNA upstream 619869 85690520 ~ 85708770 (+) True LOC110530827
XM_021614113.2 mRNA upstream 665582 85658600 ~ 85663057 (+) True LOC110530829
XM_036986621.1 mRNA downstream 23419 86352274 ~ 86555806 (+) True LOC110530844
XM_036986626.1 mRNA downstream 240845 86569700 ~ 86583738 (+) True LOC110504868
XM_036986627.1 mRNA downstream 262655 86591510 ~ 86627902 (+) False LOC110530851
XM_036986641.1 mRNA downstream 583322 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 674324 87003179 ~ 87406445 (+) True LOC110530822
TU860829 other upstream 97180 86230351 ~ 86231459 (+) True G757754
TU860712 other upstream 210691 86117663 ~ 86117948 (+) True G757663
TU860498 other upstream 300365 85951968 ~ 86028274 (+) True G757472
TU859221 other upstream 1064546 85256782 ~ 85264093 (+) True LOC118965572
TU859074 other upstream 1390895 84936066 ~ 84937744 (+) False G756298
TU860993 other downstream 202298 86531153 ~ 86532379 (+) True G757902
TU861161 other downstream 305929 86634784 ~ 86635460 (+) True G758045
TU861389 other downstream 583321 86912176 ~ 86920509 (+) False ly97.3
TU861390 other downstream 583321 86912176 ~ 86920509 (+) False ly97.3
TU861391 other downstream 583321 86912176 ~ 86920509 (+) True ly97.3

Expression Profile