RNA id: TU861135



Basic Information


Item Value
RNA id TU861135
length 303
lncRNA type intronic
GC content 0.46
exon number 2
gene id G758022
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 86577460 ~ 86577961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctcatctctgtaccccacacatacagtaaggtccttcatctctgtaccccacacatacagtaaggtccttcatctctgtaccccacacatacaattatctgtaaggtccctcatctctgtaccccacacatacagtaaggtccctcatctctgtaccccacacatactgtaaggtccctcatctctgtaccccacacatacaattatctgtaaggcccttcatctctgtaccccaacacatacaattatctgtaaggtccctcatctctgtaccccacacatacaattatctgtaaggtccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU860998 lncRNA upstream 27980 86549031 ~ 86549480 (+) True G757907
TU860973 lncRNA upstream 97417 86479235 ~ 86480043 (+) True G757884
TU860946 lncRNA upstream 209699 86367141 ~ 86367761 (+) True G757859
TU860931 lncRNA upstream 245937 86331323 ~ 86331523 (+) True G757844
TU860929 lncRNA upstream 247398 86329802 ~ 86330062 (+) True G757842
TU861137 lncRNA downstream 2728 86580689 ~ 86580920 (+) True G758024
TU861126 lncRNA downstream 6756 86584717 ~ 86585095 (+) True G758013
TU861152 lncRNA downstream 8507 86586468 ~ 86586742 (+) True G758037
TU861156 lncRNA downstream 22475 86600436 ~ 86631776 (+) True G758040
TU861155 lncRNA downstream 43586 86621547 ~ 86629379 (+) True LOC110530851
XM_036986621.1 mRNA upstream 21654 86352274 ~ 86555806 (+) True LOC110530844
XM_036986618.1 mRNA upstream 696243 85793000 ~ 85881217 (+) True LOC110531032
XM_021614109.2 mRNA upstream 816502 85739005 ~ 85760958 (+) True LOC110530826
XM_036986893.1 mRNA upstream 864254 85709654 ~ 85713206 (+) True LOC118965641
XM_021614110.2 mRNA upstream 868690 85690520 ~ 85708770 (+) True LOC110530827
XM_036986627.1 mRNA downstream 13549 86591510 ~ 86627902 (+) False LOC110530851
XM_036986641.1 mRNA downstream 334216 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 425218 87003179 ~ 87406445 (+) True LOC110530822
XM_036986642.1 mRNA downstream 954989 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 991111 87569072 ~ 87661724 (+) False LOC110512128
TU860993 other upstream 45081 86531153 ~ 86532379 (+) True G757902
TU860829 other upstream 346001 86230351 ~ 86231459 (+) True G757754
TU860712 other upstream 459512 86117663 ~ 86117948 (+) True G757663
TU860498 other upstream 549186 85951968 ~ 86028274 (+) True G757472
TU859221 other upstream 1313367 85256782 ~ 85264093 (+) True LOC118965572
TU861161 other downstream 56823 86634784 ~ 86635460 (+) True G758045
TU861389 other downstream 334215 86912176 ~ 86920509 (+) False ly97.3
TU861390 other downstream 334215 86912176 ~ 86920509 (+) False ly97.3
TU861391 other downstream 334215 86912176 ~ 86920509 (+) True ly97.3
TU861418 other downstream 355485 86933446 ~ 86934011 (+) True G758259

Expression Profile