RNA id: TU861156


Basic Information

Item Value
RNA id TU861156
length 1623
lncRNA type read_through
GC content 0.43
exon number 3
gene id G758040
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 86600436 ~ 86631776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aactgacttgcctagTAAGGtaaaaataaacaatacattttgtCGGTTTTCTGCATTAAACATTTTGACAATACATTCCGTTAGGAAGTCATATTTTCACAGATTAACTTTCAAGTTTTAGTTTGCCTTCTGGTTTTTATCTTGATGGGGGAGACCTTGCGTTTGGTGGGGACATTTTGTTTTTCATTGCGCGCGTTGACCGCTCGGGGTTGTAAAACGTCCTCGTCCTCTCCTGCCTGCTGCTTAGCAAAGTTCACAAACAcctggagaacagagagaggaaaacccATTACTATCAACACAATGTCAATGAAAACACTAATGCTCTATAAAAGTACTTTATAATCATATATTCACGACAGCTATTTCGCTCGCTGCTTGCCGAGTACGGTACCATCAATTTGTACTCAAGGATGTTCTGTATTCAAGTCTTAATCTCTCATAATAAATCCTCCTGACGTCGGATGTCTTCCTGGCTGTGTTTGATGAGGTCATATTGCTGAGTCTATCCTTAAACATTGCCATGCTCATTACCACCTGTCGTGTGGTCAGTGAAACACTTAGTTGCTTGTCTTTAAACCTAAATCCTAAACACCTCATCCCTAATCTTAACACCAGCCCTGTAATTACCTGATCTAGTGTAGTCTGATACTAAATCCCAAACACCTAATCCCTAATCTTAACACCAGACCTATAGTTACCCGATCTAGTGTAGTCTGATAGACAGAGTATTCACCTGATCTAGTGTAGTCTGATAGACAGAGTACTCACCTGATCTAGTGTAGTCTGATAGACAGAGTACTCACCTGATCTAGTGTAGTCTGATAGACAGAGTACTCACCTGATCTAGTGTAGTCTGATAGACAGAGTATTCACCTGATCTAGTGTGGTCTGATAGACGGAGTATTCACCTGATCTAGTGTGGTCTGATGGAGTATTCACCTGATCTAGTGTGGTCTGATTGAGTATTCACCTGATCTAGTGTGGTCTGATAGACGGAGTATTCACCTGATCTACTGTGGTCTGATAGACAGAGTAGTTATCTGATCTAGTGTGGTCTGAAAGAGCAGTCACCTGATCTAGTGTAGTCTGATACACAGAGTTGTCACATGATCTAGTGTAGTCTGACAGAGCAGTTACCTGATTTAGTGAGGTCTTATAGAGTAGTCACCTGATATAGTGTATTCTGACAGAGTAGTCACCCGATCTAGTGTAGTCTGACAGACAGAGTAGTAGCCTGATCTAGTGTAGTCTGATAGATGGAGTAGTCACCTGATCTAGTGTAGTCTGATAGAGTGGTCACCTGATCTAGTGTAGTCTGTGATATAGAGTAGTTACCTGATATAGTGTAGTCTGATAGACAGAGTAGTTACCTGATCTAGTGTAGTCTGTGATACAGAGTAATCCTCTATATTGAGTTTGTCCTTGTTGGCGACCACCAGCTGGAAGATCCTAGCGAGGGAGGAGGAGGCGATCTCATACTgcagagtgttgtagtgtttctctctctggacacaccCTGGGAAGCTGCTCTCCATGAAGCTCTCTGCTGGACCCAGCTCTGGAGATACGCCTGCTTTAGCTGCCTTAACCTTCATGGTCACCACGTAGCCATCACCAAAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861152 lncRNA upstream 13694 86586468 ~ 86586742 (+) True G758037
TU861126 lncRNA upstream 15341 86584717 ~ 86585095 (+) True G758013
TU861137 lncRNA upstream 19516 86580689 ~ 86580920 (+) True G758024
TU861135 lncRNA upstream 22475 86577460 ~ 86577961 (+) True G758022
TU860998 lncRNA upstream 50956 86549031 ~ 86549480 (+) True G757907
TU861165 lncRNA downstream 12305 86644081 ~ 86646900 (+) True G758047
TU861216 lncRNA downstream 113390 86745166 ~ 86746225 (+) False G758084
TU861219 lncRNA downstream 113390 86745166 ~ 86746225 (+) True G758084
TU861225 lncRNA downstream 127030 86758806 ~ 86764272 (+) False G758090
TU861226 lncRNA downstream 131723 86763499 ~ 86764272 (+) True G758090
XM_036986626.1 mRNA upstream 16698 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 44630 86352274 ~ 86555806 (+) True LOC110530844
XM_036986618.1 mRNA upstream 719219 85793000 ~ 85881217 (+) True LOC110531032
XM_021614109.2 mRNA upstream 839478 85739005 ~ 85760958 (+) True LOC110530826
XM_036986893.1 mRNA upstream 887230 85709654 ~ 85713206 (+) True LOC118965641
XM_036986641.1 mRNA downstream 280401 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 371403 87003179 ~ 87406445 (+) True LOC110530822
XM_036986642.1 mRNA downstream 901174 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 937296 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 937296 87569072 ~ 87670895 (+) False LOC110512128
TU860993 other upstream 68057 86531153 ~ 86532379 (+) True G757902
TU860829 other upstream 368977 86230351 ~ 86231459 (+) True G757754
TU860712 other upstream 482488 86117663 ~ 86117948 (+) True G757663
TU860498 other upstream 572162 85951968 ~ 86028274 (+) True G757472
TU859221 other upstream 1336343 85256782 ~ 85264093 (+) True LOC118965572
TU861161 other downstream 3008 86634784 ~ 86635460 (+) True G758045
TU861389 other downstream 280400 86912176 ~ 86920509 (+) False ly97.3
TU861390 other downstream 280400 86912176 ~ 86920509 (+) False ly97.3
TU861391 other downstream 280400 86912176 ~ 86920509 (+) True ly97.3
TU861418 other downstream 301670 86933446 ~ 86934011 (+) True G758259

Expression Profile