RNA id: TU861254


Basic Information

Item Value
RNA id TU861254
length 1873
lncRNA type intronic
GC content 0.37
exon number 3
gene id G758118
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 86817753 ~ 86824513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacacagtagataacaagtagcacggtagtccttactagatcaacacagtagataacaagtagcacagtagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagaacaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacagtagtccttattagatcaacacagtagataacaagtagcacaaTAGTCCTTATTAgaacaacacagtagataacaagtagaacagtagtccttattagatcaacacagtagataacaagtagcacgatagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacgatagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacggtAGTCTTTATTAgaacaacacagtagataacaagtagcatggtagtccttattagatcaacacagtagataacaagtagcacagtagtccttattagatcaacacagtagataacaagtagcacggtagtccttatttgaacaacacagtagataacaagtagcacagtagtccttattagatcaacacagtagataacaagtagcacgaTAGTCCTTATTAgaacaacacagtagataacaagtagaacggtagtccttattagatcaacacagtagataacaagtagcacggttgtccttattagatcaacacagtagataacaagtagcacgaTAGTCCTCattagatcaacacagtagataacaagtagcacggtagtccttattagaacaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacggCAGTCCTTATTAgaacaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacggtagtccttatttgaacaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacagtagtccttattagatcaacacagtagataacaagtagcacgaTAGTCCTTATTAgaacaacacagtagataacaagtagaacggtagtccttattagatcaacacagtagataacaagtagcacggttgtccttattagatcaacacagtagataacaagtagcacgatagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagaacaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagaacaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacagtagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagaacaacacagtagataacaagtagcacagtagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagataacaagtagcacgatagtccttattagatcaacacagtagataacaagtagcacggtagtccttattagatcaacacagtagaATGACTTCATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861182 lncRNA upstream 46179 86769661 ~ 86772850 (+) False G758059
TU861188 lncRNA upstream 46179 86771517 ~ 86772850 (+) True G758059
TU861225 lncRNA upstream 54757 86758806 ~ 86764272 (+) False G758090
TU861226 lncRNA upstream 54757 86763499 ~ 86764272 (+) True G758090
TU861219 lncRNA upstream 72804 86745166 ~ 86746225 (+) True G758084
TU861259 lncRNA downstream 2312 86826825 ~ 86827726 (+) True G758122
TU861370 lncRNA downstream 34344 86858857 ~ 86859066 (+) True G758215
TU861378 lncRNA downstream 39664 86864177 ~ 86864404 (+) True G758223
TU861384 lncRNA downstream 46060 86870573 ~ 86871907 (+) True G758229
TU861385 lncRNA downstream 47768 86872281 ~ 86872704 (+) True G758230
XM_036986627.1 mRNA upstream 191127 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 235291 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 263223 86352274 ~ 86555806 (+) True LOC110530844
XM_036986618.1 mRNA upstream 937812 85793000 ~ 85881217 (+) True LOC110531032
XM_021614109.2 mRNA upstream 1058071 85739005 ~ 85760958 (+) True LOC110530826
XM_036986641.1 mRNA downstream 87664 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 178666 87003179 ~ 87406445 (+) True LOC110530822
XM_036986642.1 mRNA downstream 708437 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 744559 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 744559 87569072 ~ 87670895 (+) False LOC110512128
TU861161 other upstream 183569 86634784 ~ 86635460 (+) True G758045
TU860993 other upstream 286650 86531153 ~ 86532379 (+) True G757902
TU860829 other upstream 587570 86230351 ~ 86231459 (+) True G757754
TU860712 other upstream 701081 86117663 ~ 86117948 (+) True G757663
TU860498 other upstream 790755 85951968 ~ 86028274 (+) True G757472
TU861389 other downstream 87663 86912176 ~ 86920509 (+) False ly97.3
TU861390 other downstream 87663 86912176 ~ 86920509 (+) False ly97.3
TU861391 other downstream 87663 86912176 ~ 86920509 (+) True ly97.3
TU861418 other downstream 108933 86933446 ~ 86934011 (+) True G758259
TU861774 other downstream 892304 87716817 ~ 87717718 (+) True G758531

Expression Profile