RNA id: TU861385


Basic Information

Item Value
RNA id TU861385
length 424
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G758230
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 86872281 ~ 86872704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACCTCAATGATCCAGCTGGCGTAGACCTCTACCTCAATGATCCAGCTGGCGTAGACCTCTACCTCAATGATCCAGCTGGCGTAGACCTCTACCTCAATGAAACCACACCGGCCCATTCCATTATTAGCCAGATAGTTATAACAAGttagacaggcccactgggcTAAAAATGTACCAGCCCATATGGAATTTGCCCGAAATGCCAGATTGCGAGTCCGCCGCCGGATCCCAAACCTGGTAGCGAGTATCAGCAGCATTGTGTGGATATTCACTAGTTTGTTATAGTCTGGTTCcagatgtgtttgtgttgttattgaccataggagttggcaaggcaGTTGGCAaggcagcacaaacagatctggaaccaggctagtcTGGTATGCAGTTGAAATAAAGACAGCCACTGTGTTTGGTTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861384 lncRNA upstream 374 86870573 ~ 86871907 (+) True G758229
TU861378 lncRNA upstream 7877 86864177 ~ 86864404 (+) True G758223
TU861370 lncRNA upstream 13215 86858857 ~ 86859066 (+) True G758215
TU861259 lncRNA upstream 44555 86826825 ~ 86827726 (+) True G758122
TU861255 lncRNA upstream 47768 86817753 ~ 86824513 (+) False G758118
TU861387 lncRNA downstream 219 86872923 ~ 86874716 (+) True G758231
TU861397 lncRNA downstream 3793 86876497 ~ 86876853 (+) True G758238
TU861405 lncRNA downstream 19677 86892381 ~ 86892830 (+) True G758246
TU861406 lncRNA downstream 23340 86896044 ~ 86896471 (+) True G758247
TU861393 lncRNA downstream 49365 86922069 ~ 86922605 (+) True G758234
XM_036986627.1 mRNA upstream 244379 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 288543 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 316475 86352274 ~ 86555806 (+) True LOC110530844
XM_036986618.1 mRNA upstream 991064 85793000 ~ 85881217 (+) True LOC110531032
XM_021614109.2 mRNA upstream 1111323 85739005 ~ 85760958 (+) True LOC110530826
XM_036986641.1 mRNA downstream 39473 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 130475 87003179 ~ 87406445 (+) True LOC110530822
XM_036986642.1 mRNA downstream 660246 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 696368 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 696368 87569072 ~ 87670895 (+) False LOC110512128
TU861161 other upstream 236821 86634784 ~ 86635460 (+) True G758045
TU860993 other upstream 339902 86531153 ~ 86532379 (+) True G757902
TU860829 other upstream 640822 86230351 ~ 86231459 (+) True G757754
TU860712 other upstream 754333 86117663 ~ 86117948 (+) True G757663
TU860498 other upstream 844007 85951968 ~ 86028274 (+) True G757472
TU861389 other downstream 39472 86912176 ~ 86920509 (+) False ly97.3
TU861390 other downstream 39472 86912176 ~ 86920509 (+) False ly97.3
TU861391 other downstream 39472 86912176 ~ 86920509 (+) True ly97.3
TU861418 other downstream 60742 86933446 ~ 86934011 (+) True G758259
TU861774 other downstream 844113 87716817 ~ 87717718 (+) True G758531

Expression Profile