RNA id: TU861397



Basic Information


Item Value
RNA id TU861397
length 336
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G758238
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 86876497 ~ 86876853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCCGTGGGTGTCTCCTGGAGGTTTCCCCGGCTCAAACCGGACGGCCAGACCAAAGTCTCCGATGACGGCTGTCAGATCACGTCTCAACATCACGTTCTTACTCTTGAAGTCCCTGGGAAACATAGTTTATATATAACCCGTTTATCTAAGCAGGTAAGTTATTGACTTTGAAAACACATGATGTCACCTGTGTGCGATGGTGGGTTTGGGGCCTTCTCCCTTGTTGATGGCTGTGTCTTCATGGAGGTAGGCCAGACCACGGGACATCGTCTCAGCAATGTGACACATTTCAGACCAGGTCACTGTACGGTCCTTCAGATGGTCAGTCAACGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU861387 lncRNA upstream 1781 86872923 ~ 86874716 (+) True G758231
TU861385 lncRNA upstream 3793 86872281 ~ 86872704 (+) True G758230
TU861384 lncRNA upstream 4590 86870573 ~ 86871907 (+) True G758229
TU861378 lncRNA upstream 12093 86864177 ~ 86864404 (+) True G758223
TU861370 lncRNA upstream 17431 86858857 ~ 86859066 (+) True G758215
TU861405 lncRNA downstream 15528 86892381 ~ 86892830 (+) True G758246
TU861406 lncRNA downstream 19191 86896044 ~ 86896471 (+) True G758247
TU861393 lncRNA downstream 45216 86922069 ~ 86922605 (+) True G758234
TU861416 lncRNA downstream 46164 86923017 ~ 86930648 (+) True G758257
TU861424 lncRNA downstream 67758 86944611 ~ 86945425 (+) True G758265
XM_036986627.1 mRNA upstream 248595 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 292759 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 320691 86352274 ~ 86555806 (+) True LOC110530844
XM_036986618.1 mRNA upstream 995280 85793000 ~ 85881217 (+) True LOC110531032
XM_021614109.2 mRNA upstream 1115539 85739005 ~ 85760958 (+) True LOC110530826
XM_036986641.1 mRNA downstream 35324 86912177 ~ 86920513 (+) False ly97.3
XM_036986895.1 mRNA downstream 126326 87003179 ~ 87406445 (+) True LOC110530822
XM_036986642.1 mRNA downstream 656097 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 692219 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 692219 87569072 ~ 87670895 (+) False LOC110512128
TU861161 other upstream 241037 86634784 ~ 86635460 (+) True G758045
TU860993 other upstream 344118 86531153 ~ 86532379 (+) True G757902
TU860829 other upstream 645038 86230351 ~ 86231459 (+) True G757754
TU860712 other upstream 758549 86117663 ~ 86117948 (+) True G757663
TU860498 other upstream 848223 85951968 ~ 86028274 (+) True G757472
TU861389 other downstream 35323 86912176 ~ 86920509 (+) False ly97.3
TU861390 other downstream 35323 86912176 ~ 86920509 (+) False ly97.3
TU861391 other downstream 35323 86912176 ~ 86920509 (+) True ly97.3
TU861418 other downstream 56593 86933446 ~ 86934011 (+) True G758259
TU861774 other downstream 839964 87716817 ~ 87717718 (+) True G758531

Expression Profile