RNA id: TU861393


Basic Information

Item Value
RNA id TU861393
length 515
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G758234
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 86922069 ~ 86922605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGTTTCGCATCAGGGCTGAGCACAGAACAGACGAGAAGTGGATTGTGGGAAATGTACAGTATGACAGCCACTCACCCTTTCATGACAAACAGAAATACTGAAAAAATAAACTGTTGGTGAGTTGACagttgaagacagttgaagacagttgaagacagttgaagacagttgaagacagttgaagacagttgaagacagttgaagacagttgGAAGACAttggaagacagttgaagacagttgaagacagttgaagacagttggaagacagttgaagacagttgaagacagttgaagacagttgGAAGAGTAGTAGTTGTACTGGCAGGAAGCCTTCAAGTATCTGGATATCCCAGTGTAGTGTTCGGTTCTCTGTTCTGATTGATCAGCAGCTCTACATCAAGGAGCAGGAAGTCTTCCCTGGTTGGACGCCGCCTTCCAGCTTCTCCGCCTCCAGGATCATCCTCTTGAACACCTCCACCGccgtctgacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861406 lncRNA upstream 25598 86896044 ~ 86896471 (+) True G758247
TU861405 lncRNA upstream 29239 86892381 ~ 86892830 (+) True G758246
TU861397 lncRNA upstream 45216 86876497 ~ 86876853 (+) True G758238
TU861387 lncRNA upstream 47353 86872923 ~ 86874716 (+) True G758231
TU861385 lncRNA upstream 49365 86872281 ~ 86872704 (+) True G758230
TU861416 lncRNA downstream 412 86923017 ~ 86930648 (+) True G758257
TU861424 lncRNA downstream 22006 86944611 ~ 86945425 (+) True G758265
TU861426 lncRNA downstream 25166 86947771 ~ 86948247 (+) True G758267
TU861488 lncRNA downstream 123766 87046371 ~ 87046649 (+) True G758311
TU861506 lncRNA downstream 165963 87088568 ~ 87089927 (+) True G758326
XM_036986641.1 mRNA upstream 1556 86912177 ~ 86920513 (+) False ly97.3
XM_036986627.1 mRNA upstream 294167 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 338331 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 366263 86352274 ~ 86555806 (+) True LOC110530844
XM_036986618.1 mRNA upstream 1040852 85793000 ~ 85881217 (+) True LOC110531032
XM_036986895.1 mRNA downstream 80574 87003179 ~ 87406445 (+) True LOC110530822
XM_036986642.1 mRNA downstream 610345 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 646467 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 646467 87569072 ~ 87670895 (+) False LOC110512128
XM_036986643.1 mRNA downstream 646467 87569072 ~ 87671104 (+) False LOC110512128
TU861389 other upstream 1560 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 1560 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 1560 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 286609 86634784 ~ 86635460 (+) True G758045
TU860993 other upstream 389690 86531153 ~ 86532379 (+) True G757902
TU861418 other downstream 10841 86933446 ~ 86934011 (+) True G758259
TU861774 other downstream 794212 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 809689 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 952515 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 1043087 87965692 ~ 87971929 (+) True G758976

Expression Profile