RNA id: TU861488


Basic Information

Item Value
RNA id TU861488
length 201
lncRNA type intronic
GC content 0.53
exon number 2
gene id G758311
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87046371 ~ 87046649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttagagtgttgggtcagtaaccagctggcagcctagtggttagagtgttgggtcagtaaccagcaggcagcctagtggttagagtgttgggtcagtaaccagcaggtagcctagtggttagagtgttgggtcagtaaccagcaggcagcctagtggttagcgtgttgggtcagtaaccagcaggtagcctagtggttagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861426 lncRNA upstream 98124 86947771 ~ 86948247 (+) True G758267
TU861424 lncRNA upstream 100946 86944611 ~ 86945425 (+) True G758265
TU861416 lncRNA upstream 115723 86923017 ~ 86930648 (+) True G758257
TU861393 lncRNA upstream 123766 86922069 ~ 86922605 (+) True G758234
TU861406 lncRNA upstream 149900 86896044 ~ 86896471 (+) True G758247
TU861506 lncRNA downstream 41919 87088568 ~ 87089927 (+) True G758326
TU861532 lncRNA downstream 122304 87168953 ~ 87170378 (+) True G758350
TU861602 lncRNA downstream 303377 87350026 ~ 87350754 (+) True G758410
TU861638 lncRNA downstream 360878 87407527 ~ 87412837 (+) False G758432
TU861644 lncRNA downstream 360878 87407527 ~ 87434306 (+) False G758432
XM_036986641.1 mRNA upstream 125858 86912177 ~ 86920513 (+) False ly97.3
XM_036986627.1 mRNA upstream 418469 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 462633 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 490565 86352274 ~ 86555806 (+) True LOC110530844
XM_036986618.1 mRNA upstream 1165154 85793000 ~ 85881217 (+) True LOC110531032
XM_036986642.1 mRNA downstream 486301 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 522423 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 522423 87569072 ~ 87670895 (+) False LOC110512128
XM_036986643.1 mRNA downstream 522423 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA downstream 522540 87569189 ~ 87671104 (+) True LOC110512128
TU861418 other upstream 112360 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 125862 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 125862 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 125862 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 410911 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 670168 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 685645 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 828471 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 919043 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 945321 87991970 ~ 87995145 (+) True G758988

Expression Profile