RNA id: TU861602


Basic Information

Item Value
RNA id TU861602
length 411
lncRNA type intronic
GC content 0.42
exon number 3
gene id G758410
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87350026 ~ 87350754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttttttttttttttgggggggggtggatgGTTATTGGGGAACGTTAACGCAAATAACCTCTTCTTTAGTCAGGTAAAGACCATAGATCCTCTGAAGGGCCCAGGAAGTTACAACAGTCCTCACAGGTAAAGACCATAGATCCTCTGAAGGGCCCAGGAAGTTACAACAGTCCTCAGAGGTAAAGACCATAGATCCTCTGAAGGGCCCAGGAAGTTACAACAGTCCTCAGAGGTAAAGACCATAGATCCTCTGAAGGGTATTTCTTCTTCTCTGCTCTAACTGTCAAGGAAGTCTTGATCTTTTGAATGACACAGGTCAGAGTTTTCCTCCACAGACATTACCTCTCGAGTTCAATCTCGGCACTGTTACCGACTGATAAATTTAATGtcggaattatttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861532 lncRNA upstream 179648 87168953 ~ 87170378 (+) True G758350
TU861506 lncRNA upstream 260099 87088568 ~ 87089927 (+) True G758326
TU861488 lncRNA upstream 303377 87046371 ~ 87046649 (+) True G758311
TU861426 lncRNA upstream 401779 86947771 ~ 86948247 (+) True G758267
TU861424 lncRNA upstream 404601 86944611 ~ 86945425 (+) True G758265
TU861638 lncRNA downstream 56773 87407527 ~ 87412837 (+) False G758432
TU861644 lncRNA downstream 56773 87407527 ~ 87434306 (+) False G758432
TU861647 lncRNA downstream 56773 87407527 ~ 87435638 (+) False G758432
TU861639 lncRNA downstream 58199 87408953 ~ 87424989 (+) False G758432
TU861640 lncRNA downstream 59304 87410058 ~ 87426400 (+) False G758432
XM_036986641.1 mRNA upstream 429513 86912177 ~ 86920513 (+) False ly97.3
XM_036986627.1 mRNA upstream 722124 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 766288 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 794220 86352274 ~ 86555806 (+) True LOC110530844
XM_036986618.1 mRNA upstream 1468809 85793000 ~ 85881217 (+) True LOC110531032
XM_036986642.1 mRNA downstream 182196 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 218318 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 218318 87569072 ~ 87670895 (+) False LOC110512128
XM_036986643.1 mRNA downstream 218318 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA downstream 218435 87569189 ~ 87671104 (+) True LOC110512128
TU861418 other upstream 416015 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 429517 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 429517 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 429517 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 714566 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 366063 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 381540 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 524366 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 614938 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 641216 87991970 ~ 87995145 (+) True G758988

Expression Profile