RNA id: TU861638


Basic Information

Item Value
RNA id TU861638
length 2394
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G758432
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87407527 ~ 87435638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccctctccatcttcctcatcctcctcttcctctttcctttcctcctcaACCTCCTCTTCCACATCGCTCCCTTccacctctttcccttcctcctcttccttctctttcccttcctcatcttcctcctcaacctcctctttcccttccttctcttcctcttttccttcattttcctcctcttcatcttcctcatcctcctcctcttcctccctgtatatctctgtgGTTTCCCCTGGGCTGAGGCTGGCTTCACTCCATCCCATCTGCATTGCGTGTGCCGTGTGTGTGATGTCACATATACTATGGGTATGATGTCACAGGCGTAACATGTACTACCTCTCATATGCATGTGGACTGGATGTGGGGGGTTGTGTAGGAAGCGCACCCCAACCTATCGCCATGGCTACTGTTACTACAGTTACTTGTACAATCACTCTAGTACACTTAAAaaacagagaagggagagatcaaccacttatataaacagagagagagagagagagagataaacaacttatataaacagagagagagaaatcaaccacttatataaacagagagagagagagagagagagagcgagatcaaccacttatgtaaacagagagagagagagagagagagagatagagatcaaccacttatataaacagagagagggagagagagaacaaccacttatataaacagagaaacggagagagagagagagagagatcaaccacttatataaacagagagagagagagagatgaaccacttatataaacagagagagggagagagagaacaaccacttatataaacagagagagggagagagagagagatcaaccacttctataaacagagagagagggagagagacatcaaacactcatataaacagagagagagagggatatcaaccacttatataaacagagagagagagggagatcaaccacttatataaacacagagagagagagagagagatcaaccacttatataaacagagagagagagagagagagatgaaccacttatataaacagggagagggagagagagaagaaccacttatataaacagagagagggagagagatagatcaACCACttctataaacagagagagagggagagagacatcaaacacttatataaacagagagagagagggagatcaaccacttatataaacagagagagagagagagatcaaccacttatataaacagagagagagagagagagagagatcaaacacttatataaacagagagagagagagatcaacaacttatataaacagagagagagagattaaccacttatataaacagagagagagagagagagagagagatagagatcaaccacttatatgaacagagagagagatcaaccacttatataaacagagacagagagagctcagccacttatataaacagagagagagagagagatcgaccacttatataaacagagagagagagagagagagagaaaggagatcaaccacttatataaacagagagagagagagatcaaccacttaaataaaaagagacagagagagagagagatcagccacttatataaacagagagagagagagagagatcaaccacttatataaacagagagagagagagagatcaaccacttatataaacagagagagggagagagagagatcaaccacttatataaacagagagagagagatcatccacttatataaacagagagagagagagagaaagattaccacttatataaacacagagagagagagaaagagatcaaccacttatataaatagagagagagatatcatccacttatataaacagagagagagagagatcaaccacttatataaacagagagagggagagagagagatatcaaccacttatataaacagagagggggagtgagagatcaaccacttatataaacagagagagagatcatccacttatataaacagagagagatcaaccacttatataaacagagagagggagagagagagagatcaaccacttatataaacagagggagcgagagatcacccacttatataaacagagagagagagagagatcaaccacttatataaacagagagagagagagagagatcaaccacttatataaacagagagagagagagagggagatcaaccacttatataaacagagagagagagagagagagatcaaccacttatataaacagagagagagagagatcaacaacttatataaacagagagaaagacagagaaatcaaccacttatataaacaaagagagagagagagagatcaaccacttatataaacagagagagagagagagagagacatcaaacacttatataaacagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861602 lncRNA upstream 56773 87350026 ~ 87350754 (+) True G758410
TU861532 lncRNA upstream 237149 87168953 ~ 87170378 (+) True G758350
TU861506 lncRNA upstream 317600 87088568 ~ 87089927 (+) True G758326
TU861488 lncRNA upstream 360878 87046371 ~ 87046649 (+) True G758311
TU861426 lncRNA upstream 459280 86947771 ~ 86948247 (+) True G758267
TU861661 lncRNA downstream 2891 87415728 ~ 87416894 (+) True G758433
TU861642 lncRNA downstream 3299 87416136 ~ 87432764 (+) True G758432
TU861714 lncRNA downstream 128390 87541227 ~ 87541539 (+) True G758482
TU861718 lncRNA downstream 134674 87547511 ~ 87547931 (+) True G758486
TU861751 lncRNA downstream 210492 87623329 ~ 87633544 (+) True G758512
XM_036986895.1 mRNA upstream 1082 87003179 ~ 87406445 (+) True LOC110530822
XM_036986641.1 mRNA upstream 487014 86912177 ~ 86920513 (+) False ly97.3
XM_036986627.1 mRNA upstream 779625 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 823789 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 851721 86352274 ~ 86555806 (+) True LOC110530844
XM_036986642.1 mRNA downstream 120113 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 156235 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 156235 87569072 ~ 87670895 (+) False LOC110512128
XM_036986643.1 mRNA downstream 156235 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA downstream 156352 87569189 ~ 87671104 (+) True LOC110512128
TU861418 other upstream 473516 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 487018 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 487018 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 487018 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 772067 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 303980 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 319457 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 462283 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 552855 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 579133 87991970 ~ 87995145 (+) True G758988

Expression Profile