RNA id: TU861642


Basic Information

Item Value
RNA id TU861642
length 2694
lncRNA type inter_gene
GC content 0.39
exon number 7
gene id G758432
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87407527 ~ 87435638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcaaccacttaaataaaaagagacagagagagagagagatcagccacttatataaacagagagagagagagagagatcaaccacttatataaacagagacagagagagagagagagagagagagagagatcaaccacttatataagcagagagagagagagatcaaccacttatttcaacacacagagagagagagagagatcaacctcTTAAATAAacagggaaagagaaggagagagatcaaccacttatataaacagaaagagagatcaaccacttatataaacagagagagggagagagagagatcaaccacttatataaacagagggagcgagagatcacccacttatataaacagtGAGAGAGATCAAACAAttctataaacagagagagagagagagaaagatcaaccacttaaataaacagagacagagagagagagagagagagagatcaaccacttaaataaacagagagagagggagagagagatcaaccacttatataaacagagagagagatcatccactcatataaacagagagagagagagagttcaaccacttatataaacagagagagggagagagatcaaccacttatataaacagagagagagagagatcatccactcatataaacagagagagagagagatcaaccacttatataaacagagagagagagatagagatcaaccacttatataaacagagagagggagggagggagagatcaaccacttatataaacagagacagagagagagagagagagatcaaccacttatttcaacacacagagagagagagagacggagagagagagagagagagagagagagagatcaacctcttatataaacagagggagagagagagagagagagagaccagccacTTATATGAacagggaaagagaaggagagagatcaaccacttatataaacagagagagggagagagagagatcaaccacttatataaacagagagagagagatcatccacttatataaacagagagagagagagagaaagattaccacttatataaacacagagagagagagaaagagatcaaccacttatataaacagagagagagatagagaggtcaaccacttatataaacagagagggggagtgagagatcaaccacttatatatacagagagagggagagagagatatcaaccacttatataaacagagagagggagagaggtagagatcaaccacttatataaatgcagagagagagatcaaccatttatataaacagagagagagagagagatcacccacttatttcaacacagagagagagagagatcacccaCTTATTTCAACACagagagagagagagatcaacctcttatataaacagagaaagagaaggagagatcaaccacttatataaacagagagagatcaactacttatataaacagagggagcgagagatcacccacttatataaacagagagagagagatcatccacttatgtaaacagagagagatagagagaaagatcaaccacttatataaacagagagagagagagaaagagatcagccacttatataaacacagagtgagagagaggtcaaccacttatataaacagagagggggagtgagagatcaaccacttatataaacagagagagagagagatcaaccacttatataaacagagagagggagagagagagagagctcacccacttatataaacagagagagagagagatcaaccacttatataaacagagagagagagagagagatcaaccacttgtataaacagagagagagagagagagagagatcaaccacgtatataaacagagacagagagagagagagagagatcaaccacttaaataaacagagagagagtgatcatccacttatataaacagagagagagggagagagagagagatcaaccacttatataaacagagacagagagagagagagagatcaaccacttatatatacagagagagagagagagagatcaaccacttatataaacagagagagagagagagatcaaccacttatataaacagagagagggagagagagatcaaccacgtatataaacagagatagagagagagagagagagagagagatcaaccacttaaataaacagagagagagtgatcatccacttatataaacagagagagagagatcaactacttatgtaaacagagagagagagagagagatcaaccacttatatatacagagagagggagagagagatcaaccacttatataaacagagtgggagagagggagagatcaaccacttatataaatgCAGAGAGATCGATCAACcatttatataaacagagagagagagagatcacccacttatttcaacacagagagagagagagatcaacctcttatataaacagagaaagagaaggagagatcaaccacttatataaacagaaagagagatcaatcacttatataaacagagagagatcaaccacttatataaccagagggagcgagagatcacccacttatataaacagagagagagagatcatccacttatataaacagagagagagagagagaaagatcaaccacttatataaacagagagagagagagaaagagatcaaccacttatataaacagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861638 lncRNA upstream 3299 87407527 ~ 87412837 (+) False G758432
TU861602 lncRNA upstream 65382 87350026 ~ 87350754 (+) True G758410
TU861532 lncRNA upstream 245758 87168953 ~ 87170378 (+) True G758350
TU861506 lncRNA upstream 326209 87088568 ~ 87089927 (+) True G758326
TU861488 lncRNA upstream 369487 87046371 ~ 87046649 (+) True G758311
TU861714 lncRNA downstream 108463 87541227 ~ 87541539 (+) True G758482
TU861718 lncRNA downstream 114747 87547511 ~ 87547931 (+) True G758486
TU861751 lncRNA downstream 190565 87623329 ~ 87633544 (+) True G758512
TU861753 lncRNA downstream 200980 87633744 ~ 87634980 (+) True G758513
TU861761 lncRNA downstream 206772 87639536 ~ 87640417 (+) True G758520
XM_036986895.1 mRNA upstream 9691 87003179 ~ 87406445 (+) True LOC110530822
XM_036986641.1 mRNA upstream 495623 86912177 ~ 86920513 (+) False ly97.3
XM_036986627.1 mRNA upstream 788234 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 832398 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 860330 86352274 ~ 86555806 (+) True LOC110530844
XM_036986642.1 mRNA downstream 100186 87532950 ~ 87549838 (+) True LOC110519501
XM_036986647.1 mRNA downstream 136308 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 136308 87569072 ~ 87670895 (+) False LOC110512128
XM_036986643.1 mRNA downstream 136308 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA downstream 136425 87569189 ~ 87671104 (+) True LOC110512128
TU861418 other upstream 482125 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 495627 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 495627 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 495627 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 780676 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 284053 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 299530 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 442356 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 532928 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 559206 87991970 ~ 87995145 (+) True G758988

Expression Profile