RNA id: TU861714


Basic Information

Item Value
RNA id TU861714
length 281
lncRNA type intronic
GC content 0.48
exon number 2
gene id G758482
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87541227 ~ 87541539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggttagagtgtaggggcggcaggtagtctagtggttagagtgtaggggcagcagggtagcctagtggttagagtgtaggggcggcaggtagcctagtggttagagcgttggacttgtaaccgaaaggctgcaagATCAATTCCCctcagctgacaaggtaaaaatctgttgttctgcccctgaacaggcagttaacccactgttcctaggccatcattgaaaataagaatgtgttcttaatttaACATCCTTGTGGTTCTCTGTCTAAGCAACACAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861647 lncRNA upstream 105589 87407527 ~ 87435638 (+) False G758432
TU861644 lncRNA upstream 106921 87407527 ~ 87434306 (+) False G758432
TU861642 lncRNA upstream 108463 87416136 ~ 87432764 (+) True G758432
TU861640 lncRNA upstream 114827 87410058 ~ 87426400 (+) False G758432
TU861639 lncRNA upstream 116238 87408953 ~ 87424989 (+) False G758432
TU861718 lncRNA downstream 5972 87547511 ~ 87547931 (+) True G758486
TU861751 lncRNA downstream 81790 87623329 ~ 87633544 (+) True G758512
TU861753 lncRNA downstream 92205 87633744 ~ 87634980 (+) True G758513
TU861761 lncRNA downstream 97997 87639536 ~ 87640417 (+) True G758520
TU861732 lncRNA downstream 137810 87679349 ~ 87684205 (+) True G758495
XM_036986895.1 mRNA upstream 134782 87003179 ~ 87406445 (+) True LOC110530822
XM_036986641.1 mRNA upstream 620714 86912177 ~ 86920513 (+) False ly97.3
XM_036986627.1 mRNA upstream 913325 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 957489 86569700 ~ 86583738 (+) True LOC110504868
XM_036986621.1 mRNA upstream 985421 86352274 ~ 86555806 (+) True LOC110530844
XM_036986647.1 mRNA downstream 27533 87569072 ~ 87661724 (+) False LOC110512128
XM_036986645.1 mRNA downstream 27533 87569072 ~ 87670895 (+) False LOC110512128
XM_036986643.1 mRNA downstream 27533 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA downstream 27650 87569189 ~ 87671104 (+) True LOC110512128
XM_036986648.1 mRNA downstream 146392 87687931 ~ 87691743 (+) False LOC110512127
TU861418 other upstream 607216 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 620718 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 620718 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 620718 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 905767 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 175278 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 190755 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 333581 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 424153 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 450431 87991970 ~ 87995145 (+) True G758988

Expression Profile