RNA id: TU861751


Basic Information

Item Value
RNA id TU861751
length 2979
lncRNA type intronic
GC content 0.39
exon number 2
gene id G758512
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87623329 ~ 87633544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctatagcatatcacatcaataggacctgacctatatcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatggcatatcacatcaataggacctgacctatagcatatcctaatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatatcctaatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatatcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatggcatatcacatcaataggacctgacctatagcatatcctaatcaAATCAATAgaacctgacctatagcatatcacatcaataggacctgacctatatcatatcctaatcacatcaataggacctgacctatatcatatcctaatcacatcaataggatctgacctatagcatatcacatcaataggacctgacctatatcatatcctaatcacatcaataggatctgacctatatcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcaataggatctgacctatagcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcagtaggacctgacctatagcatatcatatCACATctataggacctgacctatagcatatcacatcaataggacctgacctatatcatagcacatcaataggacctgacctatatcctgatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatgtcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatgtcatatcacatcaataggacctgacctatagcatatcacatcaataggatctgacctatatcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcagtaggacctgacctatagcatatcatatCACATctataggacctgacctatagcatatcacatcaataggacctgacctatatcatagcacatcaataggacctgacctatatcctgatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatgtcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacccatggcatatcacatcaataggacctgacctatagcgtATCCTAATCaaatcaataggacctgacctatagcatatcacatcaataggacctgacctatatcatatcctaatcacatcaataggacctgacctatatcatatcctaatcacatcagtaggacctgacctatagcatatcctaatcacatcaataggacctgacctatatcatatcctaatcacatcaataggatctgacctatagcatatcctaatcacatcaataggacctgacctatatcatatcctaatcacatcaataggatctgacctatagcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcaataggacctgacctatagcatatcctaatcacatcaataggacctgacctagagcatatcctaatcacatcaataggacctgacctatagcatatcacatcaataagACCTGACctatatcctaatcacatcaataggacctgacctatatcatagcacatcaataggacctgacctatatcctaatcacatcaattggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcctaatcacatcaataggacctgacatatagcatatcctaatcacatcaataggtcctgacctatatcatatcttaatcacatcaataggatctgacctatagcatatcctaatcacatcaataggacctgatctatagcatatcacatcaataggacctgacctatatcatagcacatcaataggacctgacctatatcctaatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatatcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatccttatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaataggacctgacctatagcatatcctaatcacatcagtaggacctgacctatagcatatcctaatcacatcaataagaCCTGACctatatcctaatcacatcaataggacctgacctatatcatagcacatcaataggacctgacctatatccttatcacatcaataggacctgacctatagcatatcacataaataggacctgacctatagcatatcacatcaataggacctgagctatagcatatcacatcaataggacctgacctatggcatatcacatcaataggatctgacctatagcatatcctaatcaaatcaataggacctgacctatagcatatcacatcaataggatctgacctatagcatatcctaatcacatcaataggatctgacctatagcatatcacatcaataggacctgacctatagcatatcacatcaacaggacctgacctatagcatatcacatcaataggacctgacctatatcatatcttaatcacatcaataggaatctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861718 lncRNA upstream 75398 87547511 ~ 87547931 (+) True G758486
TU861714 lncRNA upstream 81790 87541227 ~ 87541539 (+) True G758482
TU861642 lncRNA upstream 190565 87416136 ~ 87432764 (+) True G758432
TU861640 lncRNA upstream 196929 87410058 ~ 87426400 (+) False G758432
TU861639 lncRNA upstream 198340 87408953 ~ 87424989 (+) False G758432
TU861753 lncRNA downstream 200 87633744 ~ 87634980 (+) True G758513
TU861761 lncRNA downstream 5992 87639536 ~ 87640417 (+) True G758520
TU861732 lncRNA downstream 45805 87679349 ~ 87684205 (+) True G758495
TU861724 lncRNA downstream 57046 87690590 ~ 87691585 (+) False LOC110512127
TU861725 lncRNA downstream 57046 87690590 ~ 87691585 (+) False LOC110512127
XM_036986642.1 mRNA upstream 73491 87532950 ~ 87549838 (+) True LOC110519501
XM_036986895.1 mRNA upstream 216884 87003179 ~ 87406445 (+) True LOC110530822
XM_036986641.1 mRNA upstream 702816 86912177 ~ 86920513 (+) False ly97.3
XM_036986627.1 mRNA upstream 995427 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 1039591 86569700 ~ 86583738 (+) True LOC110504868
XM_036986648.1 mRNA downstream 54387 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA downstream 54397 87687941 ~ 87691743 (+) False LOC110512127
XM_036986650.1 mRNA downstream 112248 87745792 ~ 87775447 (+) True LOC110513441
XM_036986662.1 mRNA downstream 383676 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 383683 88017227 ~ 88059703 (+) False acss2l
TU861418 other upstream 689318 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 702820 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 702820 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 702820 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 987869 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 83273 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 98750 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 241576 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 332148 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 358426 87991970 ~ 87995145 (+) True G758988

Expression Profile