RNA id: TU861761


Basic Information

Item Value
RNA id TU861761
length 482
lncRNA type intronic
GC content 0.39
exon number 3
gene id G758520
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87639536 ~ 87640417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctaCTATAGTAGGCCTTAACCcgctactacatcagtaactctaCTATAGTAGGCCTTAAAccactactacatcagtaactctaCTATAGTAGGCCTTAACccactactacatcagtaactctaCTATAGTAGGCCCTAACCCACTACTACATCAGTAAACTCTACTATAGTAGGCCCTAACCCACTACTACATCAGTAAACTCTACTATAGTAGTCCTTAAAccactactacatcagtaactctaCTATAGTAGGCCTTAAAccactactacatcagtaactctaCTATAGTAGGCCTTAAAccactactacatcagtaactctaCTATAGTAGGCCTTAAAccactactacatcagtaactctaCTATAGTAGGCCTTAAAccactactacatcagtaactctaCTATAGTAGGCCTTAACccactactacatcagtaactctaCTATAGTAGGCATTAACccactactacatcagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861753 lncRNA upstream 4556 87633744 ~ 87634980 (+) True G758513
TU861751 lncRNA upstream 5992 87623329 ~ 87633544 (+) True G758512
TU861718 lncRNA upstream 91605 87547511 ~ 87547931 (+) True G758486
TU861714 lncRNA upstream 97997 87541227 ~ 87541539 (+) True G758482
TU861642 lncRNA upstream 206772 87416136 ~ 87432764 (+) True G758432
TU861732 lncRNA downstream 38932 87679349 ~ 87684205 (+) True G758495
TU861724 lncRNA downstream 50173 87690590 ~ 87691585 (+) False LOC110512127
TU861725 lncRNA downstream 50173 87690590 ~ 87691585 (+) False LOC110512127
TU861726 lncRNA downstream 50173 87690590 ~ 87691585 (+) True LOC110512127
TU862216 lncRNA downstream 84252 87724669 ~ 87725814 (+) True G758860
XM_036986642.1 mRNA upstream 89698 87532950 ~ 87549838 (+) True LOC110519501
XM_036986895.1 mRNA upstream 233091 87003179 ~ 87406445 (+) True LOC110530822
XM_036986641.1 mRNA upstream 719023 86912177 ~ 86920513 (+) False ly97.3
XM_036986627.1 mRNA upstream 1011634 86591510 ~ 86627902 (+) False LOC110530851
XM_036986626.1 mRNA upstream 1055798 86569700 ~ 86583738 (+) True LOC110504868
XM_036986648.1 mRNA downstream 47514 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA downstream 47524 87687941 ~ 87691743 (+) False LOC110512127
XM_036986650.1 mRNA downstream 105375 87745792 ~ 87775447 (+) True LOC110513441
XM_036986662.1 mRNA downstream 376803 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 376810 88017227 ~ 88059703 (+) False acss2l
TU861418 other upstream 705525 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 719027 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 719027 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 719027 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 1004076 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 76400 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 91877 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 234703 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 325275 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 351553 87991970 ~ 87995145 (+) True G758988

Expression Profile