RNA id: TU861732


Basic Information

Item Value
RNA id TU861732
length 566
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G758495
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87679349 ~ 87684205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTTGGTTGATTTATGAGGGTCATATTTACATCCATtgttagagtacagtagagagAACCTGCCTGTAATTCCCCTCCAGTCCTACAGAGGGCAGAAACACCAGCGTCACTTCCTCTGAGAGCTGACGGTCACAACAAGGtggaggaagaggcagagagaccAGGGTTGTTGCGTCGTCTTCGACTGCAGCCTTGCGTGACAACACCAAACCGGATTCGTGTTTCTGGTATAgacattttttcttcttcttcttctcgaAGGGGACCAATCTTATATTTACACATTTCATCGACCAGTGTAAATGAACTGTTCTGTTTGGTGTTTTAACTTGGACAAAAGTTCAGGAAAACCTTCTAATGGAGGCTTGCTGGGCAAAATGGCTGGGCTCTCTGAAATGTGAAACGTACACGGGTCAGTTTACATAGTTGTCTTgtaaaatacaatataaaacatGTTGGAACATGATGATAGTGGATAATGTAGTAAGGTTTATTTGATGTACACATCATATAAAAGCTAAATTGCAGCACACAGACCAAAATAAAGATTAGTCATGTAGGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU861761 lncRNA upstream 38932 87639536 ~ 87640417 (+) True G758520
TU861753 lncRNA upstream 44369 87633744 ~ 87634980 (+) True G758513
TU861751 lncRNA upstream 45805 87623329 ~ 87633544 (+) True G758512
TU861718 lncRNA upstream 131418 87547511 ~ 87547931 (+) True G758486
TU861714 lncRNA upstream 137810 87541227 ~ 87541539 (+) True G758482
TU861724 lncRNA downstream 6385 87690590 ~ 87691585 (+) False LOC110512127
TU861725 lncRNA downstream 6385 87690590 ~ 87691585 (+) False LOC110512127
TU861726 lncRNA downstream 6385 87690590 ~ 87691585 (+) True LOC110512127
TU862216 lncRNA downstream 40464 87724669 ~ 87725814 (+) True G758860
TU862223 lncRNA downstream 43220 87727425 ~ 87727845 (+) True G758863
XM_036986643.1 mRNA upstream 8245 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA upstream 8245 87569189 ~ 87671104 (+) True LOC110512128
XM_036986645.1 mRNA upstream 8454 87569072 ~ 87670895 (+) False LOC110512128
XM_036986647.1 mRNA upstream 17625 87569072 ~ 87661724 (+) False LOC110512128
XM_036986642.1 mRNA upstream 129511 87532950 ~ 87549838 (+) True LOC110519501
XM_036986648.1 mRNA downstream 3726 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA downstream 3736 87687941 ~ 87691743 (+) False LOC110512127
XM_036986650.1 mRNA downstream 61587 87745792 ~ 87775447 (+) True LOC110513441
XM_036986662.1 mRNA downstream 333015 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 333022 88017227 ~ 88059703 (+) False acss2l
TU861418 other upstream 745338 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 758840 86912176 ~ 86920509 (+) False ly97.3
TU861390 other upstream 758840 86912176 ~ 86920509 (+) False ly97.3
TU861391 other upstream 758840 86912176 ~ 86920509 (+) True ly97.3
TU861161 other upstream 1043889 86634784 ~ 86635460 (+) True G758045
TU861774 other downstream 32612 87716817 ~ 87717718 (+) True G758531
TU862226 other downstream 48089 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 190915 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 281487 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 307765 87991970 ~ 87995145 (+) True G758988

Expression Profile