RNA id: TU862223


Basic Information

Item Value
RNA id TU862223
length 421
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G758863
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87727425 ~ 87727845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctgcctgcggctatggaatcctgacctgttcaccggacgtgctacctgtcccagacctgctgttttgaactctctagagacagtaggagcggtagagatactcttaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgacttgctgcaccctcgacaactactgtgattattattatttgaccatgctggtcatttatgaacatttgaacatcttggccacgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggatcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862216 lncRNA upstream 1611 87724669 ~ 87725814 (+) True G758860
TU861724 lncRNA upstream 35840 87690590 ~ 87691585 (+) False LOC110512127
TU861725 lncRNA upstream 35840 87690590 ~ 87691585 (+) False LOC110512127
TU861726 lncRNA upstream 35840 87690590 ~ 87691585 (+) True LOC110512127
TU861732 lncRNA upstream 43220 87679349 ~ 87684205 (+) True G758495
TU862237 lncRNA downstream 43156 87771001 ~ 87771761 (+) True G758877
TU862258 lncRNA downstream 65152 87792997 ~ 87796407 (+) False G758886
TU862257 lncRNA downstream 66213 87794058 ~ 87796407 (+) False G758886
TU862253 lncRNA downstream 66277 87794122 ~ 87796407 (+) False G758886
TU862254 lncRNA downstream 66277 87794122 ~ 87796407 (+) False G758886
XM_036986648.1 mRNA upstream 35682 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 35682 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 56321 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA upstream 56321 87569189 ~ 87671104 (+) True LOC110512128
XM_036986645.1 mRNA upstream 56530 87569072 ~ 87670895 (+) False LOC110512128
XM_036986650.1 mRNA downstream 17947 87745792 ~ 87775447 (+) True LOC110513441
XM_036986662.1 mRNA downstream 289375 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 289382 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 289611 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 298939 88026784 ~ 88059703 (+) True acss2l
TU861774 other upstream 9707 87716817 ~ 87717718 (+) True G758531
TU861418 other upstream 793414 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 806916 86912176 ~ 86920509 (+) False ly97.3
TU862226 other downstream 4449 87732294 ~ 87733139 (+) True G758866
TU862276 other downstream 147275 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 237847 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 264125 87991970 ~ 87995145 (+) True G758988
TU862451 other downstream 354176 88082021 ~ 88106947 (+) False G759020

Expression Profile