RNA id: TU862237


Basic Information

Item Value
RNA id TU862237
length 329
lncRNA type intronic
GC content 0.49
exon number 2
gene id G758877
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87771001 ~ 87771761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaggaactaatggggatccataataaaccccaggaagagtagctgctgccttggcaggaactaatggggatccataataaaccccaggaagagtagctgctgcctaagcaggaactaatggggaaccataataaaccccagaaagagaagctgctgccttggcaggaactaatggggatccataataaaccccaggaaaagtagctgctgccttggcaggaactaatggggatctataataaaccccaggaagagtagctgctgccttgacaggaactaatggggatccataataacccccaggaagagtagctgctgccttgacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862223 lncRNA upstream 43156 87727425 ~ 87727845 (+) True G758863
TU862216 lncRNA upstream 45187 87724669 ~ 87725814 (+) True G758860
TU861724 lncRNA upstream 79416 87690590 ~ 87691585 (+) False LOC110512127
TU861725 lncRNA upstream 79416 87690590 ~ 87691585 (+) False LOC110512127
TU861726 lncRNA upstream 79416 87690590 ~ 87691585 (+) True LOC110512127
TU862258 lncRNA downstream 21236 87792997 ~ 87796407 (+) False G758886
TU862257 lncRNA downstream 22297 87794058 ~ 87796407 (+) False G758886
TU862253 lncRNA downstream 22361 87794122 ~ 87796407 (+) False G758886
TU862254 lncRNA downstream 22361 87794122 ~ 87796407 (+) False G758886
TU862256 lncRNA downstream 22361 87794122 ~ 87796407 (+) False G758886
XM_036986648.1 mRNA upstream 79258 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 79258 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 99897 87569072 ~ 87671104 (+) False LOC110512128
XM_036986644.1 mRNA upstream 99897 87569189 ~ 87671104 (+) True LOC110512128
XM_036986645.1 mRNA upstream 100106 87569072 ~ 87670895 (+) False LOC110512128
XM_036986662.1 mRNA downstream 245459 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 245466 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 245695 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 255023 88026784 ~ 88059703 (+) True acss2l
XM_036986671.1 mRNA downstream 853680 88625441 ~ 88642762 (+) True LOC110510807
TU862226 other upstream 37862 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 53283 87716817 ~ 87717718 (+) True G758531
TU861418 other upstream 836990 86933446 ~ 86934011 (+) True G758259
TU861389 other upstream 850492 86912176 ~ 86920509 (+) False ly97.3
TU862276 other downstream 103359 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 193931 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 220209 87991970 ~ 87995145 (+) True G758988
TU862451 other downstream 310260 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 310260 88082021 ~ 88106947 (+) True G759020

Expression Profile