RNA id: TU862257


Basic Information

Item Value
RNA id TU862257
length 2100
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G758886
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87792997 ~ 87796407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGCTACATTGTGATGTATGACTTGTACATTTGAAGAGACTCCGCAAGAAGATGGCCATCAAAACCAACATTGTTTTCAGTTTTATTTCTTCAATGCTTAATACCATGGGAGGGATGGGGTTAAGAACATTTGCCTCAGAAGGTAAGGAGAGAGGATTGGACAGGAAGTGGGGAGAGGATTGGACAGGAAGTGGGGAGAGGATTGGACAGGAAGTGGGGAGAGGATTGGACAGGAAGTGGGGATAGGATTGGACAGGAAGTGGGGATAGGATTGGACAGGAAGTAGGGCTAGGATGGACAGGAAGTAGGGCTAGAATTGGATAGGAAGTAGGGATAGGATAGGAAGTAGGGATAGAATTGGACAGGAAGTAGGGAAGGACCTTTGTCCCAGATGGACTAGAAACATTTCCCAGAGAAGTAGAGAAATTACTAAACTGAACAAATCAAGTAGTCGACgtctccgtcccaaatggcaccccatctATCCGTTCGTCCATATATCCATCCagccatatagtgcactactttataccagatcGCCCTACAGGCCCTGGTGAAAAGCGGGAcattatacagggaataggagtaCCATTTTGTACGGACTACATCAGAGGCGATCCTGCATTAAGTAGCGAGGTGGTCGGTGTTTGGACAACGGAAGAAGTAGTTCTCTCCTTTTTAGCTTAAAAAAAAggattaaaataaaaatgtttcacTTAACATTTCATTCAagtactattttttattttttttataattaaaaaaaagagtgagagagcgagagaagacgATTGGTTTATTCAACTGCTTCATGTCCCCATGGTGACTAGGACCGTGTTCCAATACTTAAGAAATGCATAGTTCCTTCCTACCCATCATGCATAAGTTCCTTCCTACCCATCATGCATTAGTTCCTTCCTACCCATCATGCATTAGTTCCTTCCTACCCATCATGCATTAGTTCCTTCCTACCCATCATGCATTAGTTCCTTCCTACCCATCATGCATTAGTTCCTTCCTACCCACCATGCATTAGTTCCTTCCTACCCACCATGCATTAGTTCCTTCCTACCCACCATGCATTAGTTCCTTCCTACCCATCATGCATTAGTTCCTTCCTACCCATCTTCCTTGAAGGAATCACAGATCTGAATTGGGTAAAgtaataagggggggggggggggggggggggcttttcaCCGATCTAACCACTTATGGAGCTATGCTTACCTCGTAAGGTAGGAACGGTGCGTTAAAGTACTCTAACAGGGCCTAGGCACGTCATAAACTGTCCTCCGTGTTGATTGATAGTGTACCACTTCCTGTGTGTcccccaaaaggcaccctattccttgtgcagtgcactactgttgaccaggaccattagaagtagtgtactatgcaGGGAATAAAGGTGCTATTTGGTACGTACATCTCATACCTGCACTTAGGCTGTCTGTCCATCCAGCAAAAACAAGGCAGAAAAACTAAACGGAACCATCTTTTTCGTTAtcttccttcctttcctttcctttcctttcctctctcccctctgtgtGTACACTAACCATGTGTAAAGGCTTGCAGAAAGGCAGTGGGGGCCCTCGTactgtacagacagacaacatggcCACTGCAGACAGAGCACTACTTCTGATATGGCAAAGTCAACACAAAGTCTTTCCTTCTTGGTTAGTCAGTTCCACCCTTTCGGCCTTTTGATTCAGGAGCCGAGGGGTTGTCATTAGATACGGCAGGCGTCTTGCTTCTCCCAGGGCGCgctgtccgaaatggcaccctattccctatgtagtgccctactttgaACCAGaggcccctatgggactccctatcGGTTCTGCTCAACAAAAAAAATTGTGCACAAAatagaaaatagggtgccatttcagagccaGTTCCAGTTTACAAGATGAACTTCCCGATGAAGAATCCGATGAAGATGGCTGCTATGAcaacgaggagagaggggagggaggcggCGGTCGTCTGTTGcatcatggaggaggaggaggagcccgTCTGGTTTGATGTCATGTGGTCAGAACGCTGGGCAGCCCTTCTCATTCTAACGCCGTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862237 lncRNA upstream 22297 87771001 ~ 87771761 (+) True G758877
TU862223 lncRNA upstream 66213 87727425 ~ 87727845 (+) True G758863
TU862216 lncRNA upstream 68244 87724669 ~ 87725814 (+) True G758860
TU861725 lncRNA upstream 102473 87690590 ~ 87691585 (+) False LOC110512127
TU862295 lncRNA downstream 37347 87833754 ~ 87834480 (+) True G758908
TU862297 lncRNA downstream 40663 87837070 ~ 87837843 (+) True G758909
TU862269 lncRNA downstream 50526 87846933 ~ 87866192 (+) False G758891
TU862270 lncRNA downstream 50526 87846933 ~ 87851821 (+) False G758891
TU862271 lncRNA downstream 50526 87846933 ~ 87850341 (+) False G758891
XM_036986650.1 mRNA upstream 18611 87745792 ~ 87775447 (+) True LOC110513441
XM_036986648.1 mRNA upstream 102315 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 102315 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 122954 87569072 ~ 87671104 (+) False LOC110512128
XM_036986662.1 mRNA downstream 220813 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 220820 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 221049 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 230377 88026784 ~ 88059703 (+) True acss2l
XM_036986671.1 mRNA downstream 829034 88625441 ~ 88642762 (+) True LOC110510807
TU862226 other upstream 60919 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 76340 87716817 ~ 87717718 (+) True G758531
TU861418 other upstream 860047 86933446 ~ 86934011 (+) True G758259
TU861390 other upstream 873549 86912176 ~ 86920509 (+) False ly97.3
TU862276 other downstream 78713 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 169285 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 195563 87991970 ~ 87995145 (+) True G758988
TU862451 other downstream 285614 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 285614 88082021 ~ 88106947 (+) True G759020

Expression Profile