RNA id: TU862272


Basic Information

Item Value
RNA id TU862272
length 1271
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G758891
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87846933 ~ 87866192 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACACCTTTATTTTTCAACTGGCATGGGAAGCTACGAAAGCCTTTTAACAATATGAAAATAACCTTATGGCGAAGATGAAACCACAGTGACGTGTCATATCCATTTCAATCGTGACAGATCCGTTAATAAACGATAACATTTGTAAAATCACATTTCCCCCGGCAACAGGATTTTCTCAGACCAACAAGTTCCAACGCTGTAGAACAGAGCGCGGTCACACTTCCTTCAGTTAATTCAGATCATTACTTACGTcaacaaaaacaacagaaatgCCGAAAAAACAACATAAGAGTTGAAAATACAGTATGTTTTACATTTTACAATAATGTACATGCACATCCTGCTGTGCCGTCTTGATGTCCTTCGCTTTCACCCATCACAAATTGACACCGACAGGTAAAGTAGCGTGTTTCCATTGTTCCAATGGTCATAGACTATGTATTCTGTAATGACTGACTTATAATGTTGACTTGCGCCCACTTATAACAAGCTCTTGTTTATTAGGGCagagaatgaaaaaaaaaaaaacgttaaaaaaaaaatgttttgcaacggaaagagaaaaaaaatgtgCATTTCTCATTGAACAAGTTAAGTTAGTGCCACCCCGTGTTCAAtttgttttcttccgtttggtgcccaaatgaacacaacccagtccTTCTGACCCTCTGTCAATAAGAGATGTAATTATGAATATGGAAAAAGGAAGGCAACATTTTACTTGAAGGGTACTACCTACATAAggacttcataacacattcataacccatccaTAAAACattcataagcactacataagCATTTCGTAACGCTTATCTCTTTGGGTTCTGAAATGTGTTCTGTAGATCATTCAAAAGGTTTGTATTAACAGGCACAGCAGTGCTCAGTGAAGTTGACATGTCCGTGCTGCTTCTTCAGCTTACCATCATCTACTATATATCATATTACTGAATAAATGGCATCAGGTAGGTACATTTAAACGTTTTATATTAGCAAGGATTAGACTTCTTCTCCCAATATCTACCAGCGTATTATGTAAATATATAGAAAGACCAATCACCAATATCTACCAGAGTATTATGTAAATATATAATAGATAGATAGACTaatcggcagggtagcctagtggtttagagcgttgggccagtaaccggaaggttgcaagatcgaatcctccgagctgacaaggtacaaacaaatctgtcgttctgcccctgaataaggcagttaacccaccgttccaaggccgtcattgaaaataagaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862297 lncRNA upstream 9090 87837070 ~ 87837843 (+) True G758909
TU862295 lncRNA upstream 12453 87833754 ~ 87834480 (+) True G758908
TU862252 lncRNA upstream 50526 87794797 ~ 87796407 (+) False G758886
TU862318 lncRNA downstream 11751 87877943 ~ 87878681 (+) False G758925
TU862319 lncRNA downstream 11751 87877943 ~ 87878785 (+) True G758925
TU862320 lncRNA downstream 19010 87885202 ~ 87887096 (+) False G758926
TU862322 lncRNA downstream 19010 87885202 ~ 87886690 (+) True G758926
TU862336 lncRNA downstream 40585 87906777 ~ 87907653 (+) True G758935
XM_036986650.1 mRNA upstream 71486 87745792 ~ 87775447 (+) True LOC110513441
XM_036986648.1 mRNA upstream 155190 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 155190 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 175829 87569072 ~ 87671104 (+) False LOC110512128
XM_036986662.1 mRNA downstream 151028 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 151035 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 151264 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 160592 88026784 ~ 88059703 (+) True acss2l
XM_036986671.1 mRNA downstream 759249 88625441 ~ 88642762 (+) True LOC110510807
TU862226 other upstream 113794 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 129215 87716817 ~ 87717718 (+) True G758531
TU861418 other upstream 912922 86933446 ~ 86934011 (+) True G758259
TU861390 other upstream 926424 86912176 ~ 86920509 (+) False ly97.3
TU862276 other downstream 8928 87875120 ~ 87876684 (+) True G758892
TU862389 other downstream 99500 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 125778 87991970 ~ 87995145 (+) True G758988
TU862451 other downstream 215829 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 215829 88082021 ~ 88106947 (+) True G759020

Expression Profile