RNA id: TU862308


Basic Information

Item Value
RNA id TU862308
length 216
lncRNA type read_through
GC content 0.40
exon number 2
gene id G758915
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87851604 ~ 87907201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTATACCAGTTGTATTGGCCGCGTGTGACAAACAACATGTGAACTATGAATATATCAAGATGATATTTACAGCATAGAATGTTTCGTCTTtgtaacacaaacacacccatggATGTTAGGTTGATAAATGtatagtaaccgaaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaagcagttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862271 lncRNA upstream 1263 87846933 ~ 87850341 (+) False G758891
TU862273 lncRNA upstream 1263 87846933 ~ 87850341 (+) True G758891
TU862297 lncRNA upstream 13761 87837070 ~ 87837843 (+) True G758909
TU862295 lncRNA upstream 17124 87833754 ~ 87834480 (+) True G758908
TU862252 lncRNA upstream 55197 87794797 ~ 87796407 (+) False G758886
TU862369 lncRNA downstream 18562 87925763 ~ 87927785 (+) True G758961
TU862371 lncRNA downstream 21126 87928327 ~ 87933847 (+) True G758962
TU862374 lncRNA downstream 29990 87937191 ~ 87982296 (+) False G758965
TU862375 lncRNA downstream 29990 87937191 ~ 87939675 (+) True G758965
TU862377 lncRNA downstream 32918 87940119 ~ 87940447 (+) True G758967
XM_036986650.1 mRNA upstream 76157 87745792 ~ 87775447 (+) True LOC110513441
XM_036986648.1 mRNA upstream 159861 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 159861 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 180500 87569072 ~ 87671104 (+) False LOC110512128
XM_036986662.1 mRNA downstream 110019 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 110026 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 110255 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 119583 88026784 ~ 88059703 (+) True acss2l
XM_036986671.1 mRNA downstream 718240 88625441 ~ 88642762 (+) True LOC110510807
TU862226 other upstream 118465 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 133886 87716817 ~ 87717718 (+) True G758531
TU861418 other upstream 917593 86933446 ~ 86934011 (+) True G758259
TU861390 other upstream 931095 86912176 ~ 86920509 (+) False ly97.3
TU862389 other downstream 58491 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 84769 87991970 ~ 87995145 (+) True G758988
TU862451 other downstream 174820 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 174820 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 201805 88109006 ~ 88110300 (+) True G759031

Expression Profile