RNA id: TU862319


Basic Information

Item Value
RNA id TU862319
length 425
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G758925
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87877943 ~ 87878785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCCAACCATCTGCAAACATCACTGGCGCTAAAAATAGAAGatggaaaggggggagagaagagaggagaaagagaaaaagatagagagagtgtgtgtgtgtgtgtgtttgattttaCTATCCTTGTATGGAcaagaagtcctcacaaggatagtaaaaaaaacaaagaaaatgaTGACAAGTGGGAACATTTCgccagtccccacaaggaaagTGGCTATATAGgtttaaggttaagggttagtattaaggtttagggttaggtttaaggttaagggttaggattgaggttaagggttaggattaaggtttagggttaggattaaggtttagggttaggattaaggtttagggttaggattaaggttaagggttaggattaaggtttagggttaggattaaggtttagggttaggttgagggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862269 lncRNA upstream 11751 87846933 ~ 87866192 (+) False G758891
TU862272 lncRNA upstream 11751 87846933 ~ 87866192 (+) False G758891
TU862270 lncRNA upstream 26122 87846933 ~ 87851821 (+) False G758891
TU862271 lncRNA upstream 27602 87846933 ~ 87850341 (+) False G758891
TU862273 lncRNA upstream 27602 87846933 ~ 87850341 (+) True G758891
TU862320 lncRNA downstream 6417 87885202 ~ 87887096 (+) False G758926
TU862322 lncRNA downstream 6417 87885202 ~ 87886690 (+) True G758926
TU862336 lncRNA downstream 27992 87906777 ~ 87907653 (+) True G758935
TU862369 lncRNA downstream 46978 87925763 ~ 87927785 (+) True G758961
TU862371 lncRNA downstream 49542 87928327 ~ 87933847 (+) True G758962
XM_036986650.1 mRNA upstream 102496 87745792 ~ 87775447 (+) True LOC110513441
XM_036986648.1 mRNA upstream 186200 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 186200 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 206839 87569072 ~ 87671104 (+) False LOC110512128
XM_036986662.1 mRNA downstream 138435 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 138442 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 138671 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 147999 88026784 ~ 88059703 (+) True acss2l
XM_036986671.1 mRNA downstream 746656 88625441 ~ 88642762 (+) True LOC110510807
TU862276 other upstream 1259 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 144804 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 160225 87716817 ~ 87717718 (+) True G758531
TU861418 other upstream 943932 86933446 ~ 86934011 (+) True G758259
TU861391 other upstream 957434 86912176 ~ 86920509 (+) True ly97.3
TU862389 other downstream 86907 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 113185 87991970 ~ 87995145 (+) True G758988
TU862451 other downstream 203236 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 203236 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 230221 88109006 ~ 88110300 (+) True G759031

Expression Profile