RNA id: TU862689



Basic Information


Item Value
RNA id TU862689
length 766
lncRNA type intronic
GC content 0.38
exon number 2
gene id G759184
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87906440 ~ 87913430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctacataaccagtcctacataaccagtcatacataacctacataaccagtcctacataaccagtcatacataacctacataaccagtcctacataaccagtcatacataacctacataaccagtcctacataacctaCATACCCAGTCCTACATAACCATTCCTACATAatctacataaccagtcctacataaccagtcatacataacctacataaccattcctacataacctacataaccagtcctacataaccagtcatacataatctacataaccagtcctacataacctaCATACCCAGTCCTACATAACCATTCCTACATAATCTACATAACCAGTACTACATATCCTAaataaccagtcctacataaccagtcctacataaccagtcatacATAACCAGTCATACAtaacctacataaccagtcatacataacctacataaccagtcctacataaccagtcctacataacctacataaccagtcctacataacctacataaccagtcctacataaccagtcctacataaccagtcatacATAACCTACATAACAAGTCCTACATgtcctacataaccagtcctacataacctacataaccagtcctacataaccagtcctacataacctacataaccagtcctacataaccagtcctacataacctacataaccagtcctacataaccagtcctacataaccagtcatacATAACCAGTCATACATAACCTACATAACAAGTCCTACATAACCTACATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU862680 lncRNA downstream 5265 87900392 ~ 87901175 (-) True G759180
TU862627 lncRNA downstream 24871 87846936 ~ 87881569 (-) True G759134
TU862671 lncRNA downstream 42958 87862623 ~ 87863482 (-) True G759171
TU862664 lncRNA downstream 53319 87852776 ~ 87853121 (-) True G759168
TU862634 lncRNA downstream 65369 87836435 ~ 87841071 (-) True LOC110530881
TU862690 lncRNA upstream 2078 87910408 ~ 87913430 (-) True G759184
TU862719 lncRNA upstream 73836 87982166 ~ 87983112 (-) True G759209
TU862737 lncRNA upstream 152363 88060693 ~ 88064651 (-) True G759225
TU862754 lncRNA upstream 168433 88076763 ~ 88076982 (-) True G759242
TU862756 lncRNA upstream 170372 88078702 ~ 88080458 (-) False G759243
XM_036986652.1 mRNA downstream 29695 87849871 ~ 87876745 (-) True ralbp1
XM_036986654.1 mRNA downstream 60128 87834674 ~ 87846312 (-) False LOC110530881
XM_036986653.1 mRNA downstream 60131 87834674 ~ 87846309 (-) False LOC110530881
XM_036986651.1 mRNA downstream 81654 87794124 ~ 87824786 (-) True LOC110517127
XR_005052993.1 mRNA downstream 953063 86920601 ~ 86953377 (-) True LOC110517235
XR_005052994.1 mRNA upstream 32478 87940808 ~ 87943613 (-) False LOC110530858
XM_036986656.1 mRNA upstream 35929 87944259 ~ 88001120 (-) False LOC110531046
XM_036986657.1 mRNA upstream 35929 87944259 ~ 88001120 (-) False LOC110531046
XM_036986658.1 mRNA upstream 35929 87944259 ~ 88001120 (-) True LOC110531046
XM_021614143.2 mRNA upstream 94523 88002853 ~ 88017099 (-) False LOC110530857
TU860865 other downstream 1674248 86230374 ~ 86232192 (-) False G757788
TU860867 other downstream 1674248 86230374 ~ 86232192 (-) False G757788
TU860868 other downstream 1674248 86230374 ~ 86232192 (-) False G757788
TU860438 other downstream 2042553 85863011 ~ 85863887 (-) True G757422
TU860297 other downstream 2151202 85703130 ~ 85755238 (-) False G757292
TU862683 other upstream 32574 87940904 ~ 87942822 (-) True LOC110530858
TU863003 other upstream 522874 88431204 ~ 88443468 (-) False G759421
TU863742 other upstream 627310 88535640 ~ 88536047 (-) True G759982
TU863763 other upstream 755274 88663604 ~ 88665140 (-) False G759998
TU863860 other upstream 794661 88702991 ~ 88704054 (-) True G760051

Expression Profile